Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   M654_RS03825 Genome accession   NZ_CP048273
Coordinates   782317..782913 (-) Length   198 a.a.
NCBI ID   WP_026588863.1    Uniprot ID   A0A6I7F882
Organism   Bacillus sp. NSP9.1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 777317..787913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M654_RS03800 (M654_003795) - 777988..778584 (+) 597 WP_026588868.1 carbonic anhydrase -
  M654_RS03805 (M654_003800) - 778602..780221 (+) 1620 WP_026588867.1 solute carrier family 23 protein -
  M654_RS03810 (M654_003805) - 780258..781238 (-) 981 WP_026588866.1 HD domain-containing protein -
  M654_RS03815 (M654_003810) - 781228..781596 (-) 369 WP_051290436.1 MazG-like family protein -
  M654_RS03820 (M654_003815) - 781662..782237 (+) 576 WP_026588864.1 TIGR00730 family Rossman fold protein -
  M654_RS03825 (M654_003820) clpP 782317..782913 (-) 597 WP_026588863.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  M654_RS03835 (M654_003830) - 783544..783699 (+) 156 WP_163170544.1 hypothetical protein -
  M654_RS03840 (M654_003835) - 783833..784294 (-) 462 WP_026588862.1 hypothetical protein -
  M654_RS03845 (M654_003840) - 784847..785137 (+) 291 Protein_765 DUF1433 domain-containing protein -
  M654_RS03850 (M654_003845) - 785399..786946 (-) 1548 WP_026588861.1 glycoside hydrolase family 32 protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21805.96 Da        Isoelectric Point: 4.7982

>NTDB_id=420426 M654_RS03825 WP_026588863.1 782317..782913(-) (clpP) [Bacillus sp. NSP9.1]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPQVSTICTGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNKILAERTGQ
PLEVIERDTDRDNFKTAEEAKEYGLIDKVLTRNVDSQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=420426 M654_RS03825 WP_026588863.1 782317..782913(-) (clpP) [Bacillus sp. NSP9.1]
ATGAATTTAATACCTACAGTCATTGAACAGACGAATCGCGGGGAAAGAGCGTATGACATTTACTCACGCCTGTTGAAAGA
CCGCATCATTATGCTGGGATCGGCAATCGATGACAATGTTGCGAACTCCATTGTATCACAGCTTTTATTCCTTGAAGCTG
AAGATCCTGAAAAAGATATCAGCATCTACATTAACAGCCCTGGCGGCTCAATCACAGCCGGTATGGCGATTTATGACACC
ATGCAGTTTATCAAGCCGCAGGTTTCTACGATTTGTACGGGAATGGCGGCATCCATGGGTGCGTTCCTTCTTGCTGCCGG
TGAGAAAGGGAAACGCTATGCCCTTCCAAATAGTGAAGTGATGATTCACCAGCCGCTTGGAGGCGCCCAAGGTCAGGCGA
CTGAAATTGAAATTGCCGCGAAGCGCATTCTTTCATTGCGCGACAAGCTGAACAAAATCCTTGCTGAGCGCACAGGACAG
CCGCTTGAAGTGATCGAGCGCGATACAGACCGCGACAACTTCAAAACGGCCGAAGAAGCAAAAGAATACGGCTTGATTGA
TAAAGTGCTGACACGCAATGTCGACTCGCAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7F882

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

92.386

99.495

0.919
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.586

96.465

0.662
  clpP Streptococcus thermophilus LMG 18311

58.031

97.475

0.566
  clpP Streptococcus thermophilus LMD-9

58.031

97.475

0.566
  clpP Lactococcus lactis subsp. cremoris KW2

56.995

97.475

0.556
  clpP Streptococcus pneumoniae Rx1

56.995

97.475

0.556
  clpP Streptococcus pneumoniae D39

56.995

97.475

0.556
  clpP Streptococcus pneumoniae R6

56.995

97.475

0.556
  clpP Streptococcus pneumoniae TIGR4

56.995

97.475

0.556
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Streptococcus mutans UA159

54.639

97.98

0.535
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.922

97.475

0.535

Multiple sequence alignment