Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   SPPN_RS10330 Genome accession   NC_015875
Coordinates   1981322..1981735 (-) Length   137 a.a.
NCBI ID   WP_000265635.1    Uniprot ID   -
Organism   Streptococcus pseudopneumoniae IS7493     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1976322..1986735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPPN_RS10310 (SPPN_10435) - 1977129..1978028 (+) 900 WP_000771264.1 hypothetical protein -
  SPPN_RS10315 (SPPN_10440) - 1978030..1979232 (+) 1203 WP_000855226.1 ATP-grasp domain-containing protein -
  SPPN_RS10320 (SPPN_10445) - 1979345..1979821 (+) 477 WP_000777684.1 GNAT family N-acetyltransferase -
  SPPN_RS10325 (SPPN_10450) - 1980018..1980860 (+) 843 WP_000840058.1 helix-turn-helix domain-containing protein -
  SPPN_RS10330 (SPPN_10455) comGG/cglG 1981322..1981735 (-) 414 WP_000265635.1 competence type IV pilus minor pilin ComGG Machinery gene
  SPPN_RS10335 (SPPN_10460) comGF/cglF 1981713..1982174 (-) 462 WP_000250511.1 competence type IV pilus minor pilin ComGF Machinery gene
  SPPN_RS10340 (SPPN_10465) comGE/cglE 1982137..1982439 (-) 303 WP_000413380.1 competence type IV pilus minor pilin ComGE Machinery gene
  SPPN_RS10345 (SPPN_10470) comGD/cglD 1982402..1982836 (-) 435 WP_044012294.1 competence type IV pilus minor pilin ComGD Machinery gene
  SPPN_RS10350 (SPPN_10475) comGC/cglC 1982799..1983122 (-) 324 WP_000738647.1 comG operon protein ComGC Machinery gene
  SPPN_RS10355 (SPPN_10480) comGB/cglB 1983124..1984140 (-) 1017 WP_080564700.1 competence type IV pilus assembly protein ComGB Machinery gene
  SPPN_RS10360 (SPPN_10485) comGA/cglA/cilD 1984088..1985029 (-) 942 WP_000249547.1 competence type IV pilus ATPase ComGA Machinery gene
  SPPN_RS10365 (SPPN_10490) - 1985105..1985470 (-) 366 WP_000286407.1 DUF1033 family protein -
  SPPN_RS10370 (SPPN_10495) - 1985621..1986658 (-) 1038 Protein_2082 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15979.50 Da        Isoelectric Point: 10.1696

>NTDB_id=42031 SPPN_RS10330 WP_000265635.1 1981322..1981735(-) (comGG/cglG) [Streptococcus pseudopneumoniae IS7493]
MWKKKKVKAGVLLYAVTMAAIFSLLLQFYLNRQVVHHRDYALNKEKLIAFAMAKRTKDKVEQESGEQVYNLGQVSYQNKK
TSLVTTVRTPKSQYEFLFPSVKIKEEKKDKKEEVATDSSEKVEKKKSEEELEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=42031 SPPN_RS10330 WP_000265635.1 1981322..1981735(-) (comGG/cglG) [Streptococcus pseudopneumoniae IS7493]
GTGTGGAAAAAGAAAAAAGTTAAGGCAGGTGTTCTCCTCTATGCAGTCACCATGGCAGCCATCTTTAGTCTTTTGTTACA
ATTTTACTTGAACCGACAAGTCGTCCACCATCGAGACTATGCTTTAAATAAAGAAAAGTTAATTGCTTTTGCCATGGCCA
AGCGAACCAAAGATAAGGTTGAGCAAGAAAGTGGAGAACAGGTTTATAACCTAGGTCAGGTGAGCTATCAAAATAAGAAA
ACAAGCTTGGTGACGACGGTTCGTACGCCTAAGAGTCAATATGAGTTCCTATTTCCCTCAGTCAAAATCAAAGAAGAGAA
AAAGGATAAAAAGGAGGAGGTAGCGACCGATTCAAGCGAAAAAGTAGAGAAGAAAAAATCAGAAGAGGAGCTTGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis SK321

84.672

100

0.847

  comGG/cglG Streptococcus mitis NCTC 12261

88.43

88.321

0.781

  comGG/cglG Streptococcus pneumoniae D39

90.598

85.401

0.774

  comGG/cglG Streptococcus pneumoniae TIGR4

90.598

85.401

0.774

  comGG/cglG Streptococcus pneumoniae R6

90.598

85.401

0.774

  comGG/cglG Streptococcus pneumoniae Rx1

90.598

85.401

0.774

  comYG Streptococcus mutans UA140

39.231

94.891

0.372

  comYG Streptococcus mutans UA159

39.231

94.891

0.372


Multiple sequence alignment