Detailed information
Bioinformatically predicted
Overview
| Name | clpP | Type | Regulator |
| Locus tag | SPPN_RS03730 | Genome accession | NC_015875 |
| Coordinates | 722474..723064 (+) | Length | 196 a.a. |
| NCBI ID | WP_000613475.1 | Uniprot ID | F9HD24 |
| Organism | Streptococcus pseudopneumoniae IS7493 | ||
| Function | degradation of ComX; degradation of ComW (predicted from homology) Competence regulation |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 721115..731820 | 722474..723064 | within | 0 |
Gene organization within MGE regions
Location: 721115..731820
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SPPN_RS03720 (SPPN_03780) | - | 721115..721582 (+) | 468 | WP_000136976.1 | deoxycytidylate deaminase | - |
| SPPN_RS03725 (SPPN_03785) | upp | 721671..722300 (+) | 630 | WP_000515974.1 | uracil phosphoribosyltransferase | - |
| SPPN_RS03730 (SPPN_03790) | clpP | 722474..723064 (+) | 591 | WP_000613475.1 | ATP-dependent Clp protease proteolytic subunit ClpP | Regulator |
| SPPN_RS03735 (SPPN_03795) | - | 723143..723391 (+) | 249 | WP_000462126.1 | YlbG family protein | - |
| SPPN_RS03740 (SPPN_03800) | - | 723492..724652 (+) | 1161 | WP_000726426.1 | ABC transporter substrate-binding protein | - |
| SPPN_RS03745 (SPPN_03805) | - | 724769..725638 (+) | 870 | WP_000941427.1 | branched-chain amino acid ABC transporter permease | - |
| SPPN_RS03750 (SPPN_03810) | - | 725642..726592 (+) | 951 | WP_000662285.1 | branched-chain amino acid ABC transporter permease | - |
| SPPN_RS03755 (SPPN_03815) | - | 726598..727362 (+) | 765 | WP_001185994.1 | ABC transporter ATP-binding protein | - |
| SPPN_RS03760 (SPPN_03820) | - | 727362..728072 (+) | 711 | WP_000062201.1 | ABC transporter ATP-binding protein | - |
| SPPN_RS03765 (SPPN_03825) | - | 728325..728981 (+) | 657 | WP_000268665.1 | CBS domain-containing protein | - |
| SPPN_RS03770 (SPPN_03830) | prfB | 729096..730191 (+) | 1096 | WP_148255715.1 | peptide chain release factor 2 | - |
| SPPN_RS03775 (SPPN_03835) | ftsE | 730209..730901 (+) | 693 | WP_000022265.1 | cell division ATP-binding protein FtsE | - |
| SPPN_RS03780 (SPPN_03840) | ftsX | 730894..731820 (+) | 927 | WP_000625541.1 | permease-like cell division protein FtsX | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 21340.32 Da Isoelectric Point: 4.4910
>NTDB_id=41989 SPPN_RS03730 WP_000613475.1 722474..723064(+) (clpP) [Streptococcus pseudopneumoniae IS7493]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQ
SIEKVHADAERDNWMSAQETLEYGFIDEIMANNSLN
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQ
SIEKVHADAERDNWMSAQETLEYGFIDEIMANNSLN
Nucleotide
Download Length: 591 bp
>NTDB_id=41989 SPPN_RS03730 WP_000613475.1 722474..723064(+) (clpP) [Streptococcus pseudopneumoniae IS7493]
ATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGAGAACGTTCCTACGATATTTACTCACGTCTTCTTAAAGACCGCAT
CATTATGCTGACAGGTCCAGTTGAAGACAATATGGCTAACTCTGTTATTGCCCAATTGCTTTTCTTGGATGCCCAAGATA
GTACAAAAGATATTTACCTTTATGTCAATACACCTGGTGGTTCCGTTTCAGCTGGTTTGGCAATCGTTGATACCATGAAC
TTTATCAAGGCAGATGTCCAAACCATCGTTATGGGTATGGCAGCATCTATGGGGACGGTCATCGCATCAAGTGGAGCAAA
AGGCAAACGTTTCATGCTTCCAAATGCTGAATACATGATTCACCAACCAATGGGCGGTACAGGTGGTGGTACTCAACAAA
CCGATATGGCGATCGCTGCAGAACACTTGCTTAAAACTCGTAACACCTTGGAAAAAATCTTGGCTGAAAATTCAGGTCAG
TCAATCGAAAAAGTCCATGCAGATGCAGAACGAGATAACTGGATGAGTGCCCAAGAAACACTTGAATATGGCTTTATTGA
TGAAATCATGGCCAACAATTCATTGAACTAA
ATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGAGAACGTTCCTACGATATTTACTCACGTCTTCTTAAAGACCGCAT
CATTATGCTGACAGGTCCAGTTGAAGACAATATGGCTAACTCTGTTATTGCCCAATTGCTTTTCTTGGATGCCCAAGATA
GTACAAAAGATATTTACCTTTATGTCAATACACCTGGTGGTTCCGTTTCAGCTGGTTTGGCAATCGTTGATACCATGAAC
TTTATCAAGGCAGATGTCCAAACCATCGTTATGGGTATGGCAGCATCTATGGGGACGGTCATCGCATCAAGTGGAGCAAA
AGGCAAACGTTTCATGCTTCCAAATGCTGAATACATGATTCACCAACCAATGGGCGGTACAGGTGGTGGTACTCAACAAA
CCGATATGGCGATCGCTGCAGAACACTTGCTTAAAACTCGTAACACCTTGGAAAAAATCTTGGCTGAAAATTCAGGTCAG
TCAATCGAAAAAGTCCATGCAGATGCAGAACGAGATAACTGGATGAGTGCCCAAGAAACACTTGAATATGGCTTTATTGA
TGAAATCATGGCCAACAATTCATTGAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpP | Streptococcus pneumoniae Rx1 |
99.49 |
100 |
0.995 |
| clpP | Streptococcus pneumoniae D39 |
99.49 |
100 |
0.995 |
| clpP | Streptococcus pneumoniae R6 |
99.49 |
100 |
0.995 |
| clpP | Streptococcus pneumoniae TIGR4 |
99.49 |
100 |
0.995 |
| clpP | Streptococcus thermophilus LMG 18311 |
93.333 |
99.49 |
0.929 |
| clpP | Streptococcus thermophilus LMD-9 |
93.333 |
99.49 |
0.929 |
| clpP | Streptococcus pyogenes JRS4 |
91.282 |
99.49 |
0.908 |
| clpP | Streptococcus pyogenes MGAS315 |
91.282 |
99.49 |
0.908 |
| clpP | Streptococcus mutans UA159 |
86.224 |
100 |
0.862 |
| clpP | Lactococcus lactis subsp. lactis strain DGCC12653 |
85.128 |
99.49 |
0.847 |
| clpP | Lactococcus lactis subsp. cremoris KW2 |
84.615 |
99.49 |
0.842 |
| clpP | Bacillus subtilis subsp. subtilis str. 168 |
58.854 |
97.959 |
0.577 |
| clpP | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
58.031 |
98.469 |
0.571 |