Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   IBL27_RS06905 Genome accession   NZ_CP061071
Coordinates   1408310..1408990 (-) Length   226 a.a.
NCBI ID   WP_002269714.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1403310..1413990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS06890 (IBL27_06890) - 1403770..1405118 (+) 1349 WP_188318734.1 IS3-like element ISSmu1 family transposase -
  IBL27_RS06895 (IBL27_06895) - 1405274..1405900 (-) 627 WP_002264731.1 DUF805 domain-containing protein -
  IBL27_RS06900 (IBL27_06900) comEC/celB 1406086..1408320 (-) 2235 WP_002311064.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IBL27_RS06905 (IBL27_06905) comEA/celA/cilE 1408310..1408990 (-) 681 WP_002269714.1 helix-hairpin-helix domain-containing protein Machinery gene
  IBL27_RS06910 (IBL27_06910) - 1409130..1409882 (-) 753 WP_002265384.1 lysophospholipid acyltransferase family protein -
  IBL27_RS06915 (IBL27_06915) - 1410021..1410956 (+) 936 WP_002283422.1 polysaccharide deacetylase family protein -
  IBL27_RS06920 (IBL27_06920) - 1411041..1411553 (+) 513 WP_024784375.1 HXXEE domain-containing protein -
  IBL27_RS06925 (IBL27_06925) - 1411599..1412618 (+) 1020 WP_002275179.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24589.91 Da        Isoelectric Point: 7.0283

>NTDB_id=419814 IBL27_RS06905 WP_002269714.1 1408310..1408990(-) (comEA/celA/cilE) [Streptococcus mutans B04Sm5]
MVDEFLDKLKEKKNVFTLVGGLVVLLGLGVYFFFPSSNKQEDSLARLKEQSLQVTTKTGKESQKKTQVTTAKSTITVDIK
GAVKHEGVYTLPIDSRIDDVIEKAGGFSEKADRKSVNLAQKLQDEAVIYVAAIGENISVIRDSQEGKTSQADKANTKETS
VKGKVNLNTATLADLQTISGIGEKKAQDILDYREANGGFKSVDDLKNISGIGDKTFEKLKDLVSVD

Nucleotide


Download         Length: 681 bp        

>NTDB_id=419814 IBL27_RS06905 WP_002269714.1 1408310..1408990(-) (comEA/celA/cilE) [Streptococcus mutans B04Sm5]
ATGGTTGACGAATTTTTAGATAAACTCAAGGAAAAGAAAAATGTTTTTACCCTAGTTGGTGGTCTTGTAGTCTTACTGGG
TCTGGGTGTTTATTTCTTTTTTCCTTCTTCCAATAAGCAGGAAGATAGTCTGGCTCGTTTAAAGGAACAATCCCTTCAGG
TAACCACAAAGACTGGCAAAGAAAGTCAGAAGAAGACGCAGGTGACGACTGCCAAATCAACAATAACTGTTGATATTAAA
GGAGCTGTTAAGCATGAGGGCGTCTATACTTTACCGATTGACAGTCGTATTGATGATGTGATAGAAAAAGCGGGAGGTTT
TTCTGAAAAGGCTGATCGCAAATCTGTTAATCTGGCTCAAAAATTACAAGACGAAGCAGTTATTTATGTGGCAGCTATTG
GTGAGAATATTAGTGTCATTAGGGATTCTCAAGAAGGTAAAACCAGTCAGGCAGATAAGGCAAATACTAAAGAAACTTCG
GTAAAAGGTAAGGTTAATCTTAATACTGCCACTTTGGCTGATTTACAGACTATTTCTGGAATCGGTGAGAAGAAAGCTCA
GGATATTCTTGATTACCGTGAAGCCAATGGAGGTTTTAAGTCAGTGGATGATTTGAAAAATATTTCAGGGATTGGCGATA
AAACATTTGAGAAGTTAAAGGATTTAGTCAGTGTTGATTAG

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(77-130)

Helix-hairpin-helix motif (HHH_3)

(163-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis NCTC 12261

42.06

100

0.434
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

41.631

100

0.429
  comEA/celA/cilE Streptococcus mitis SK321

41.81

100

0.429
  comEA/celA/cilE Streptococcus pneumoniae D39

41.202

100

0.425
  comEA/celA/cilE Streptococcus pneumoniae Rx1

41.202

100

0.425
  comEA/celA/cilE Streptococcus pneumoniae R6

41.202

100

0.425
  comEA Lactococcus lactis subsp. cremoris KW2

42.478

100

0.425
  comEA Streptococcus thermophilus LMD-9

57.143

68.142

0.389
  comEA Latilactobacillus sakei subsp. sakei 23K

35.537

100

0.381