Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GWK36_RS03685 Genome accession   NZ_CP048029
Coordinates   729553..731067 (+) Length   504 a.a.
NCBI ID   WP_166270006.1    Uniprot ID   A0A6G7VBR7
Organism   Caldichromatium japonicum strain No.7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 724553..736067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK36_RS03660 (GWK36_03660) - 725235..726191 (-) 957 WP_166270001.1 HD domain-containing phosphohydrolase -
  GWK36_RS03665 (GWK36_03665) - 726453..727802 (-) 1350 WP_166270002.1 ammonium transporter -
  GWK36_RS03670 (GWK36_03670) - 727826..728164 (-) 339 WP_166270003.1 P-II family nitrogen regulator -
  GWK36_RS03675 (GWK36_03675) - 728190..728909 (-) 720 WP_166270004.1 TorF family putative porin -
  GWK36_RS03680 (GWK36_03680) - 729283..729549 (+) 267 WP_166270005.1 accessory factor UbiK family protein -
  GWK36_RS03685 (GWK36_03685) comM 729553..731067 (+) 1515 WP_166270006.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GWK36_RS03690 (GWK36_03690) pilU 731171..732370 (+) 1200 WP_166270007.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  GWK36_RS03695 (GWK36_03695) pilU 732385..733446 (+) 1062 WP_166270008.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  GWK36_RS03700 (GWK36_03700) - 733625..735019 (-) 1395 WP_166270009.1 SUMF1/EgtB/PvdO family nonheme iron enzyme -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53605.91 Da        Isoelectric Point: 8.2004

>NTDB_id=419571 GWK36_RS03685 WP_166270006.1 729553..731067(+) (comM) [Caldichromatium japonicum strain No.7]
MGLCVIHSRGCLGIEAPPVAVEVHLAAGLPALSIVGLPEAAVRESKDRVRSALRNAGFQFPDGRVTINLAPADLPKEGGR
FDLPIALGIIGASGQMPVESLEGCECVGELALSGALRPIQGVLPVALAVRAAGRALILPWTNGPEAALVSGLRVYPAEHL
LAVCAHLAGTKPLSSEQAVSEEGWAPSYPDLAEVRGQGQAKRALEIAAAGGHSLLMIGPPGTGKSMLASRLPGLLPPLSE
SEALEVAAIRSVGGRDPFDPKRWRERPFRSPHHTASGVAMVGGGAQPKPGEISLAHHGVLFLDELPEFDRRVLEVLREPL
EAGWIDIARAAQRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTADQVTRYRARISGPLLDRIDLQVEVLRLDPSELTDP
RAPSIEGSTQVRARVMAAHERQLARAGKLNAGLSPPEIERDCILDAAGRHLIAQAMHKLTLSARAYHRILKVARTIADLA
NAPRIEPLHLGEAIGYRRLDRGSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=419571 GWK36_RS03685 WP_166270006.1 729553..731067(+) (comM) [Caldichromatium japonicum strain No.7]
TTGGGTCTGTGTGTCATTCATAGCCGTGGATGCCTCGGTATCGAGGCCCCGCCGGTTGCGGTCGAGGTGCATCTGGCAGC
GGGTCTGCCCGCGCTCTCCATCGTCGGCCTGCCCGAGGCAGCGGTACGCGAAAGCAAGGATCGTGTGCGCAGCGCCTTGC
GCAATGCGGGATTTCAATTTCCCGATGGGCGGGTCACCATCAACCTGGCCCCTGCCGATCTGCCCAAGGAGGGCGGTCGC
TTCGATCTGCCCATCGCCCTAGGGATCATCGGCGCCTCGGGGCAGATGCCGGTCGAATCGCTGGAGGGGTGTGAATGTGT
CGGCGAGCTCGCCCTTTCCGGGGCGCTGCGCCCGATTCAAGGGGTCTTGCCGGTCGCCTTGGCGGTGCGCGCCGCTGGGC
GTGCCCTGATCCTGCCGTGGACCAATGGGCCGGAAGCGGCTTTGGTCAGTGGTTTGCGGGTCTATCCAGCAGAGCATCTG
CTTGCAGTTTGTGCCCATCTGGCGGGAACCAAGCCGTTGTCCTCGGAGCAAGCCGTATCCGAGGAGGGATGGGCGCCGAG
CTATCCAGACCTCGCCGAGGTACGTGGTCAGGGACAGGCCAAGCGGGCCCTGGAGATCGCCGCAGCTGGTGGCCATTCAT
TGCTGATGATCGGGCCACCCGGCACGGGCAAATCCATGCTTGCCAGCCGGCTACCGGGTCTGTTGCCGCCCTTGAGCGAA
TCTGAGGCCCTTGAGGTCGCAGCGATCCGTTCAGTTGGCGGACGAGACCCCTTCGACCCCAAACGCTGGCGAGAGCGCCC
TTTTCGCTCACCGCATCATACCGCCTCGGGCGTAGCCATGGTCGGTGGCGGCGCCCAACCTAAACCCGGCGAGATCTCGC
TGGCGCATCATGGGGTTTTGTTTCTCGATGAACTTCCCGAATTCGATCGGCGGGTGCTTGAGGTCTTGCGCGAACCCCTG
GAGGCAGGCTGGATCGACATCGCACGGGCGGCGCAACGGGTACGTTTCCCCGCCCGTTTTCAGCTCGTGGCCGCCATGAA
CCCCTGTCCCTGCGGTTACTTGGGTGACCCCAGCGGTCGCTGTCGCTGTACCGCCGACCAGGTTACCCGCTATCGTGCCC
GGATCTCCGGGCCCTTGCTCGACCGCATCGACCTCCAGGTCGAGGTGTTGCGCCTTGATCCGTCCGAACTCACGGATCCG
CGCGCCCCCTCTATCGAGGGCAGCACCCAGGTCCGCGCGCGGGTCATGGCAGCGCACGAACGGCAGCTTGCCCGTGCCGG
TAAGCTCAATGCCGGCCTCAGTCCCCCTGAGATCGAACGCGATTGTATCCTTGATGCAGCAGGCCGACATCTGATTGCCC
AGGCGATGCACAAGCTCACCCTATCGGCTCGCGCCTATCACCGTATCCTTAAGGTCGCACGCACCATCGCCGATCTCGCC
AACGCACCGAGGATTGAGCCGCTGCATCTGGGCGAGGCCATTGGCTATCGCCGGCTCGATCGCGGCAGCGGGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7VBR7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.092

99.405

0.538
  comM Vibrio campbellii strain DS40M4

53.493

99.405

0.532
  comM Haemophilus influenzae Rd KW20

52.559

100

0.53
  comM Glaesserella parasuis strain SC1401

52.277

100

0.524
  comM Legionella pneumophila str. Paris

50.296

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.296

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.638

100

0.48

Multiple sequence alignment