Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   E3S79_RS07380 Genome accession   NZ_CP047795
Coordinates   1548199..1548696 (-) Length   165 a.a.
NCBI ID   WP_160192110.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_490     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1543199..1553696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S79_RS07355 (E3S79_07355) gcvPB 1543361..1544833 (-) 1473 WP_000202176.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  E3S79_RS07360 (E3S79_07360) gcvPA 1544826..1546172 (-) 1347 WP_160192106.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  E3S79_RS07365 (E3S79_07365) gcvT 1546204..1547283 (-) 1080 WP_160192107.1 glycine cleavage system aminomethyltransferase GcvT -
  E3S79_RS07370 (E3S79_07370) - 1547442..1547966 (-) 525 WP_160192109.1 shikimate kinase -
  E3S79_RS07375 (E3S79_07375) - 1547956..1548102 (-) 147 WP_001789879.1 hypothetical protein -
  E3S79_RS07380 (E3S79_07380) comGF 1548199..1548696 (-) 498 WP_160192110.1 competence type IV pilus minor pilin ComGF Machinery gene
  E3S79_RS07385 (E3S79_07385) comGE 1548614..1548913 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  E3S79_RS07390 (E3S79_07390) comGD 1548900..1549346 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  E3S79_RS07395 (E3S79_07395) comGC 1549324..1549635 (-) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  E3S79_RS07400 (E3S79_07400) comGB 1549649..1550719 (-) 1071 WP_000776409.1 competence type IV pilus assembly protein ComGB Machinery gene
  E3S79_RS07405 (E3S79_07405) comGA 1550691..1551665 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  E3S79_RS07410 (E3S79_07410) - 1551717..1552340 (-) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  E3S79_RS07415 (E3S79_07415) - 1552337..1552666 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  E3S79_RS07420 (E3S79_07420) - 1552666..1553652 (-) 987 WP_000161307.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19157.84 Da        Isoelectric Point: 10.1358

>NTDB_id=416503 E3S79_RS07380 WP_160192110.1 1548199..1548696(-) (comGF) [Staphylococcus aureus strain UP_490]
MILSKVTNKYVPFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDKNDIEIRQQRIILHKGEEMIEYKLINNKTIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNLQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=416503 E3S79_RS07380 WP_160192110.1 1548199..1548696(-) (comGF) [Staphylococcus aureus strain UP_490]
ATGATATTAAGCAAAGTGACCAACAAATATGTGCCATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAAAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAACTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATCTGCAGACT
AAAACAATTTATGTATAA

Domains

Predicted by InterProScan.

Putative Competence protein ComGF (ComGF)

(68-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

97.576

100

0.976
  comGF Staphylococcus aureus MW2

95.152

100

0.952

Multiple sequence alignment