Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   E3S79_RS07390 Genome accession   NZ_CP047795
Coordinates   1548900..1549346 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_490     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1543900..1554346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S79_RS07360 (E3S79_07360) gcvPA 1544826..1546172 (-) 1347 WP_160192106.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  E3S79_RS07365 (E3S79_07365) gcvT 1546204..1547283 (-) 1080 WP_160192107.1 glycine cleavage system aminomethyltransferase GcvT -
  E3S79_RS07370 (E3S79_07370) - 1547442..1547966 (-) 525 WP_160192109.1 shikimate kinase -
  E3S79_RS07375 (E3S79_07375) - 1547956..1548102 (-) 147 WP_001789879.1 hypothetical protein -
  E3S79_RS07380 (E3S79_07380) comGF 1548199..1548696 (-) 498 WP_160192110.1 competence type IV pilus minor pilin ComGF Machinery gene
  E3S79_RS07385 (E3S79_07385) comGE 1548614..1548913 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  E3S79_RS07390 (E3S79_07390) comGD 1548900..1549346 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  E3S79_RS07395 (E3S79_07395) comGC 1549324..1549635 (-) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  E3S79_RS07400 (E3S79_07400) comGB 1549649..1550719 (-) 1071 WP_000776409.1 competence type IV pilus assembly protein ComGB Machinery gene
  E3S79_RS07405 (E3S79_07405) comGA 1550691..1551665 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  E3S79_RS07410 (E3S79_07410) - 1551717..1552340 (-) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  E3S79_RS07415 (E3S79_07415) - 1552337..1552666 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  E3S79_RS07420 (E3S79_07420) - 1552666..1553652 (-) 987 WP_000161307.1 ROK family glucokinase -
  E3S79_RS07425 (E3S79_07425) - 1553649..1553852 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=416505 E3S79_RS07390 WP_001796473.1 1548900..1549346(-) (comGD) [Staphylococcus aureus strain UP_490]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=416505 E3S79_RS07390 WP_001796473.1 1548900..1549346(-) (comGD) [Staphylococcus aureus strain UP_490]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
CATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment