Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   HMPREF0833_RS09680 Genome accession   NC_015678
Coordinates   2053911..2055896 (+) Length   661 a.a.
NCBI ID   WP_013904706.1    Uniprot ID   F8DIA6
Organism   Streptococcus parasanguinis ATCC 15912     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2048911..2060896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0833_RS09660 (HMPREF0833_11930) - 2049317..2050543 (+) 1227 WP_013904703.1 cysteine desulfurase -
  HMPREF0833_RS09665 (HMPREF0833_11931) sufU 2050530..2050964 (+) 435 WP_013904704.1 Fe-S cluster assembly sulfur transfer protein SufU -
  HMPREF0833_RS09670 (HMPREF0833_11932) sufB 2050997..2052409 (+) 1413 WP_003015477.1 Fe-S cluster assembly protein SufB -
  HMPREF0833_RS09675 (HMPREF0833_11933) - 2052465..2053706 (-) 1242 WP_013904705.1 serine hydrolase -
  HMPREF0833_RS09680 (HMPREF0833_11934) amiA3 2053911..2055896 (+) 1986 WP_013904706.1 peptide ABC transporter substrate-binding protein Regulator
  HMPREF0833_RS09685 (HMPREF0833_11935) amiC 2055970..2057469 (+) 1500 WP_013904707.1 ABC transporter permease Regulator
  HMPREF0833_RS09690 (HMPREF0833_11936) amiD 2057469..2058395 (+) 927 WP_013904708.1 oligopeptide ABC transporter permease OppC Regulator
  HMPREF0833_RS09695 (HMPREF0833_11937) amiE 2058407..2059474 (+) 1068 WP_013904709.1 ABC transporter ATP-binding protein Regulator
  HMPREF0833_RS09700 (HMPREF0833_11938) amiF 2059485..2060411 (+) 927 WP_003010296.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 72664.00 Da        Isoelectric Point: 5.1938

>NTDB_id=41411 HMPREF0833_RS09680 WP_013904706.1 2053911..2055896(+) (amiA3) [Streptococcus parasanguinis ATCC 15912]
MKKGKVFAVAGVTLLAAGLLAACSSSNTSKASSGEDKNYGYVYTSDPTTLDYTISSKAATHDITTNVVDGLLENDKYGNL
VPSLAEDWSVSKDGLTYTYKIRKGVKWYDADGEEHGEVTAKDFVTGLKHAADKKSETLPLVQGSVKGLDDYVQGKITDFS
QVGVKAVDDYTLQYTLNKPETFWNSKTTNGILFPISTEFLKSKGDDFGQPNDVKSILANGPFLLKSITSKSSVVFEKNDN
YWDKKNVHLKEVKYTYYDGSDQDSLARGFSDGAYTKARLFPASSNFATVEKKYKDDIFTTPAGSGVAVLGFNLDRQSYKH
TAKKSDAEKTATKKAILNKDFRQAITFALNRENYSAQVNGKEFAKPAIRNTYTAPAFVQVDGKDFGDVVADKLTTYGDQW
KGVNLADGQDGLYNKDKAKAQLEKAKAELQKDGVQFPIHIDVPVAQNSTNFVSRMQSLKQTVEDTLGKDNVVLDLQMMDS
DEVLNITLNVPSAADADWDLQGMVGWNPDYDDPSTYLDTLQPASEDQTKVYLGFAGGVDNPSAKAVGLDEFAKLLDDANN
ETQDVVKRYEKYAAAQAWLTDSAIVIPTMSSTGAATVVSKVVPFSEPSSQTGNKGSTYLKYVEVQDEPVTKKQYEQAREK
WQKEKAESNKKAQQDLEKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=41411 HMPREF0833_RS09680 WP_013904706.1 2053911..2055896(+) (amiA3) [Streptococcus parasanguinis ATCC 15912]
ATGAAAAAAGGTAAAGTATTCGCAGTTGCCGGAGTAACACTCCTTGCAGCTGGATTGTTAGCTGCATGTTCTAGTTCAAA
TACTAGCAAAGCAAGCTCAGGCGAAGACAAAAACTATGGTTATGTCTACACTTCAGATCCAACAACTTTGGACTATACAA
TTTCTTCTAAAGCTGCTACCCATGACATCACTACAAATGTGGTAGATGGTTTGTTAGAAAATGATAAATACGGTAACCTT
GTACCTTCACTTGCGGAAGACTGGTCTGTTTCTAAAGACGGTTTGACTTATACCTACAAGATTCGTAAAGGTGTCAAATG
GTATGATGCGGATGGTGAAGAACATGGCGAAGTGACTGCCAAAGACTTCGTGACTGGTTTGAAACACGCTGCTGATAAAA
AATCGGAAACTCTTCCACTCGTTCAAGGTTCTGTCAAAGGATTGGATGATTATGTCCAAGGAAAAATCACAGACTTCAGT
CAAGTTGGTGTCAAAGCGGTTGATGATTACACACTTCAATATACATTGAACAAACCTGAAACTTTCTGGAACTCTAAAAC
GACTAACGGAATTTTGTTCCCAATAAGCACAGAGTTCTTGAAGAGTAAGGGAGATGATTTTGGTCAACCAAACGATGTGA
AGTCAATCCTTGCAAACGGACCTTTCCTTCTTAAATCAATCACTTCAAAATCATCTGTTGTATTTGAAAAGAATGACAAC
TACTGGGATAAGAAAAACGTTCACCTGAAAGAAGTAAAATATACTTATTACGATGGATCAGACCAAGATTCATTGGCGCG
TGGTTTCTCTGATGGTGCTTATACAAAAGCTCGCCTTTTCCCTGCAAGTTCAAACTTTGCAACTGTAGAGAAAAAATATA
AAGACGATATCTTTACTACACCAGCAGGATCAGGTGTAGCAGTTCTTGGCTTTAACCTTGATCGTCAATCTTACAAACAC
ACTGCTAAAAAATCAGATGCTGAAAAAACTGCTACTAAGAAAGCAATTTTGAACAAAGATTTCCGTCAGGCCATCACTTT
TGCCTTGAACCGTGAAAACTACTCAGCACAAGTCAATGGTAAAGAATTTGCTAAACCAGCTATCCGTAATACCTACACAG
CACCAGCCTTTGTCCAAGTAGATGGAAAAGATTTTGGGGATGTCGTAGCAGATAAATTGACTACTTATGGAGACCAATGG
AAAGGTGTGAACCTTGCTGATGGTCAAGATGGTCTTTATAACAAGGATAAAGCTAAAGCGCAACTTGAAAAAGCCAAAGC
TGAACTTCAAAAAGATGGTGTTCAATTCCCAATTCATATTGATGTACCGGTAGCACAAAATTCTACAAACTTTGTTTCAC
GGATGCAATCTCTGAAACAAACTGTGGAAGATACTCTTGGTAAAGACAATGTCGTTCTTGATCTTCAAATGATGGACTCA
GACGAAGTGTTGAATATTACTTTGAATGTGCCATCAGCTGCAGACGCAGACTGGGATCTTCAAGGAATGGTCGGATGGAA
CCCAGACTATGATGATCCATCAACTTACCTTGATACTCTTCAACCAGCTTCTGAGGACCAAACAAAAGTTTACCTTGGTT
TTGCAGGTGGTGTAGATAACCCATCAGCAAAAGCAGTCGGTTTGGATGAGTTTGCAAAACTTCTTGACGATGCAAACAAC
GAAACACAAGATGTTGTGAAACGTTATGAAAAATACGCAGCAGCTCAAGCTTGGTTGACAGATAGTGCGATTGTTATTCC
AACGATGTCAAGTACAGGTGCTGCAACAGTTGTTTCTAAGGTAGTTCCATTCTCTGAACCATCATCACAAACAGGTAACA
AAGGTTCAACATACTTGAAATACGTTGAAGTTCAAGATGAGCCAGTTACTAAGAAACAATACGAACAAGCACGTGAAAAA
TGGCAAAAAGAAAAAGCTGAGTCAAACAAAAAAGCTCAACAAGATCTTGAAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(80-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F8DIA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.488

100

0.598
  amiA3 Streptococcus thermophilus LMG 18311

59.036

100

0.593
  amiA Streptococcus salivarius strain HSISS4

58.912

100

0.59

Multiple sequence alignment