Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   HMPREF0833_RS09685 Genome accession   NC_015678
Coordinates   2055970..2057469 (+) Length   499 a.a.
NCBI ID   WP_013904707.1    Uniprot ID   -
Organism   Streptococcus parasanguinis ATCC 15912     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2050970..2062469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0833_RS09670 (HMPREF0833_11932) sufB 2050997..2052409 (+) 1413 WP_003015477.1 Fe-S cluster assembly protein SufB -
  HMPREF0833_RS09675 (HMPREF0833_11933) - 2052465..2053706 (-) 1242 WP_013904705.1 serine hydrolase -
  HMPREF0833_RS09680 (HMPREF0833_11934) amiA3 2053911..2055896 (+) 1986 WP_013904706.1 peptide ABC transporter substrate-binding protein Regulator
  HMPREF0833_RS09685 (HMPREF0833_11935) amiC 2055970..2057469 (+) 1500 WP_013904707.1 ABC transporter permease Regulator
  HMPREF0833_RS09690 (HMPREF0833_11936) amiD 2057469..2058395 (+) 927 WP_013904708.1 oligopeptide ABC transporter permease OppC Regulator
  HMPREF0833_RS09695 (HMPREF0833_11937) amiE 2058407..2059474 (+) 1068 WP_013904709.1 ABC transporter ATP-binding protein Regulator
  HMPREF0833_RS09700 (HMPREF0833_11938) amiF 2059485..2060411 (+) 927 WP_003010296.1 ATP-binding cassette domain-containing protein Regulator
  HMPREF0833_RS10505 - 2060473..2061631 (-) 1159 Protein_1890 transposase -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55991.02 Da        Isoelectric Point: 10.1159

>NTDB_id=41412 HMPREF0833_RS09685 WP_013904707.1 2055970..2057469(+) (amiC) [Streptococcus parasanguinis ATCC 15912]
MKKYVFMRILRSLVSIFLVTTLTYMIIYTLTPRNLIFKNDPNYNKVAKTKDSKINYENTVYDRMGYLEYMDSKSLQQKAS
KEDSSVTVDATNANEKIYKKYIEKLGHGWQLKRFPESKSFYAVREIPVFERVISFYANLIQFDHPGWVKDASNPNLKRYI
RIENDPSIGWSVVGSGTKHKYLLYFNGQFPYVHQNFVTLNLGNSYPTYSNTPVLQVITQGQGTTKKSEVNFPTGKKTSSI
DIYSRTYKSPSKADSQDISRFGKGDAYTATLSNYENPSMIASSSIIGLIGIAIAYLIAIPLGSYMALFKNSWFDSISTAT
LTFMMSLPTIALVYIVRLAGSFFGLPDSFPVLGAQDWRSYVLPSLILGLLSAPFIAVWIRRYMIDIHSQDFVRFARSKGL
SEREISRKHIFKNAMVPLVSGIPGSIIGVISGATLTETVFAFPGMGKMLIDSIKASNNTMVIGLVFIFTSLGIFAAMLGD
ILMTVLDPRIKLTNTKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=41412 HMPREF0833_RS09685 WP_013904707.1 2055970..2057469(+) (amiC) [Streptococcus parasanguinis ATCC 15912]
ATGAAAAAATATGTTTTTATGCGTATTTTGCGTTCGTTAGTGTCGATCTTTCTCGTCACGACATTAACCTACATGATTAT
CTATACGCTAACACCGAGAAATCTCATCTTTAAAAATGACCCCAACTACAATAAAGTAGCGAAGACAAAGGATTCGAAGA
TCAACTACGAAAATACAGTCTACGATCGCATGGGTTATTTGGAATACATGGATTCAAAGAGCTTGCAACAAAAAGCAAGT
AAAGAAGATTCTTCCGTAACGGTTGATGCGACAAATGCCAATGAAAAGATCTACAAAAAATATATTGAAAAATTAGGTCA
TGGTTGGCAGTTGAAACGTTTCCCGGAAAGTAAGTCTTTCTATGCGGTGCGTGAAATTCCGGTTTTTGAACGTGTCATTA
GCTTCTATGCGAATTTGATTCAGTTTGATCATCCAGGTTGGGTGAAAGATGCCTCGAATCCAAATCTCAAACGCTATATC
CGTATTGAAAATGATCCATCTATTGGTTGGTCAGTTGTAGGTTCTGGTACGAAACACAAATACCTCTTGTACTTTAATGG
TCAATTCCCATATGTACACCAAAACTTTGTAACCTTAAACCTTGGAAATTCATATCCAACTTATTCAAATACCCCTGTTC
TTCAAGTGATTACCCAAGGACAAGGAACAACTAAGAAGAGTGAAGTGAACTTCCCAACAGGTAAAAAGACATCTTCCATC
GATATCTACTCACGTACTTACAAATCACCAAGTAAGGCAGACTCACAAGACATCAGTCGATTTGGTAAAGGTGACGCTTA
TACAGCAACGTTGAGCAACTATGAAAATCCATCCATGATTGCATCTTCTTCAATCATTGGTTTGATTGGTATTGCGATTG
CTTACTTGATTGCGATCCCATTAGGATCTTACATGGCTCTCTTCAAGAACTCATGGTTTGATAGCATTTCAACAGCGACC
TTGACATTTATGATGTCCCTTCCAACTATTGCCCTTGTTTACATTGTGCGTCTAGCAGGTTCATTCTTTGGACTTCCAGA
CTCATTCCCAGTTCTTGGAGCACAGGATTGGCGTTCATATGTATTGCCGTCTCTGATTCTTGGTTTGTTGAGTGCGCCAT
TTATCGCAGTTTGGATTCGTCGTTACATGATCGATATCCACTCGCAAGATTTCGTCCGTTTTGCTCGTTCAAAAGGATTG
TCAGAACGTGAGATCTCAAGAAAACACATCTTCAAAAATGCGATGGTTCCATTGGTATCTGGTATTCCAGGTTCTATTAT
TGGAGTTATCTCAGGTGCGACACTTACTGAAACAGTCTTCGCTTTCCCAGGTATGGGTAAAATGTTGATTGACTCTATTA
AAGCATCAAACAACACCATGGTCATCGGACTTGTCTTCATCTTCACATCACTTGGTATCTTTGCTGCCATGTTAGGTGAT
ATCTTGATGACAGTGCTTGATCCACGGATTAAATTAACGAATACGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

71.543

100

0.715
  amiC Streptococcus thermophilus LMD-9

71.343

100

0.713
  amiC Streptococcus thermophilus LMG 18311

71.343

100

0.713

Multiple sequence alignment