Detailed information NTG0041415

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: HMPREF0833_RS09700
• Genome accession: NC_015678
• Coordinates: 2059485..2060411 (+)
• Length: 308 a.a.
• NCBI ID: WP_003010296.1
• Uniprot ID: V8BAC4
• Organism: Streptococcus parasanguinis ATCC 15912
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 2054485..2065411

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HMPREF0833_RS09685 (HMPREF0833_11935)	amiC	2055970..2057469 (+)	1500	WP_013904707.1	ABC transporter permease	Regulator
HMPREF0833_RS09690 (HMPREF0833_11936)	amiD	2057469..2058395 (+)	927	WP_013904708.1	oligopeptide ABC transporter permease OppC	Regulator
HMPREF0833_RS09695 (HMPREF0833_11937)	amiE	2058407..2059474 (+)	1068	WP_013904709.1	ABC transporter ATP-binding protein	Regulator
HMPREF0833_RS09700 (HMPREF0833_11938)	amiF	2059485..2060411 (+)	927	WP_003010296.1	ATP-binding cassette domain-containing protein	Regulator
HMPREF0833_RS10505	-	2060473..2061631 (-)	1159	Protein_1890	transposase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 35017.00 Da
• Isoelectric Point: 6.2915

>NTDB_id=41415 HMPREF0833_RS09700 WP_003010296.1 2059485..2060411(+) (amiF) [Streptococcus parasanguinis ATCC 15912]
MTEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSAGEIIYDGRKINGKNSHS
EKSELIRKIQMIFQDPAASLNERATVDYIISEGLINHHLFNSEEERQEKVKNIMHEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMEPEFVIADEPISALDVSVRAQVLNLLKKFQRELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
HPIHPYTQSLLSAVPIPDPILERKKVLKIYDPEQHDYSEDKPQMVEIKPGHYVWANKAEENKYRQEYK

Nucleotide

• Length: 927 bp

>NTDB_id=41415 HMPREF0833_RS09700 WP_003010296.1 2059485..2060411(+) (amiF) [Streptococcus parasanguinis ATCC 15912]
ATGACTGAAAAATTAGTTGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAAAAATTCGTTGCTGTTAAAAA
CGCCAACTTCTTCATTAATAAGGGAGAAACTTTCTCTCTTGTTGGTGAATCAGGAAGTGGGAAGACAACAATTGGACGTG
CGATCATCGGTTTGAATGATACAAGTGCTGGAGAAATTATTTATGATGGTCGCAAGATCAACGGAAAAAACTCTCATAGT
GAAAAATCAGAGTTGATCCGTAAAATTCAAATGATCTTCCAAGACCCAGCAGCAAGTCTGAATGAACGTGCAACAGTTGA
TTATATTATCTCTGAAGGTTTGATCAATCACCATTTGTTTAACAGTGAAGAAGAACGTCAGGAAAAAGTAAAAAATATTA
TGCATGAAGTTGGGCTTCTTGCAGAACATTTGACACGTTACCCTCATGAATTCTCAGGTGGACAACGTCAACGGATCGGT
ATTGCCCGTGCACTTGTTATGGAACCAGAATTTGTCATTGCGGATGAACCAATCTCAGCCCTTGACGTTTCAGTACGTGC
GCAGGTCTTGAACCTTTTGAAAAAATTCCAAAGAGAATTAGGCTTGACCTACCTCTTTATCGCCCATGACTTGTCAGTTG
TGCGCTTCATTTCTGACCGTATTGCAGTTATCTATAAAGGGGTTATTGTAGAAGTAGCAGAAACTGAAGAGCTATTTAAC
CACCCAATCCATCCATATACTCAATCCCTACTTTCAGCGGTCCCAATTCCAGATCCAATTCTAGAACGTAAAAAAGTTCT
AAAAATTTATGATCCGGAACAACATGATTATTCTGAAGATAAACCACAAATGGTTGAAATTAAACCAGGTCATTATGTAT
GGGCTAACAAAGCTGAAGAAAACAAATACAGACAAGAATATAAATAG

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

• ABC transporter (ABC_tran) (25-178)

3D structure

• AlphaFold DB: V8BAC4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus salivarius strain HSISS4	84.641	99.351	0.841
amiF	Streptococcus thermophilus LMG 18311	84.314	99.351	0.838
amiF	Streptococcus thermophilus LMD-9	83.987	99.351	0.834