Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   HMPREF0833_RS09690 Genome accession   NC_015678
Coordinates   2057469..2058395 (+) Length   308 a.a.
NCBI ID   WP_013904708.1    Uniprot ID   -
Organism   Streptococcus parasanguinis ATCC 15912     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2052469..2063395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0833_RS09680 (HMPREF0833_11934) amiA3 2053911..2055896 (+) 1986 WP_013904706.1 peptide ABC transporter substrate-binding protein Regulator
  HMPREF0833_RS09685 (HMPREF0833_11935) amiC 2055970..2057469 (+) 1500 WP_013904707.1 ABC transporter permease Regulator
  HMPREF0833_RS09690 (HMPREF0833_11936) amiD 2057469..2058395 (+) 927 WP_013904708.1 oligopeptide ABC transporter permease OppC Regulator
  HMPREF0833_RS09695 (HMPREF0833_11937) amiE 2058407..2059474 (+) 1068 WP_013904709.1 ABC transporter ATP-binding protein Regulator
  HMPREF0833_RS09700 (HMPREF0833_11938) amiF 2059485..2060411 (+) 927 WP_003010296.1 ATP-binding cassette domain-containing protein Regulator
  HMPREF0833_RS10505 - 2060473..2061631 (-) 1159 Protein_1890 transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34536.58 Da        Isoelectric Point: 9.8986

>NTDB_id=41413 HMPREF0833_RS09690 WP_013904708.1 2057469..2058395(+) (amiD) [Streptococcus parasanguinis ATCC 15912]
MATIDKNKFQFVKRDDFASEVIDAPAYSYWKSVFRQFLKKRTTIIMLAILVGILLMSFVYPMFSNFDYNDVSKVNDFSAR
LNPPSGKALFGTDNNGKSLFDGVWFGARNSIIISFIATVINVVVGVIVGGIWGISKSIDRIMMEVYNVISNIPFMLIVIV
LTYSMGSGFWNLILAMSLTGWIGIAYTIRVQIMRYRDLEYNLASRTLGTPTMKIVTKNILPQLVSVIVTQTSQLLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTVLILVSLSFFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=41413 HMPREF0833_RS09690 WP_013904708.1 2057469..2058395(+) (amiD) [Streptococcus parasanguinis ATCC 15912]
ATGGCTACAATCGATAAAAATAAATTTCAGTTTGTAAAACGCGATGACTTTGCCTCTGAAGTAATCGATGCTCCAGCGTA
TTCATACTGGAAATCTGTATTCAGACAATTCTTGAAAAAAAGAACCACTATCATTATGCTTGCTATTTTGGTTGGGATTC
TCTTGATGAGTTTTGTCTATCCTATGTTTTCAAATTTTGATTACAACGACGTAAGTAAGGTAAATGACTTTTCAGCACGT
TTGAATCCACCAAGTGGGAAAGCACTATTTGGTACAGATAATAACGGTAAATCCCTCTTTGATGGAGTTTGGTTTGGTGC
TCGAAATTCCATTATCATTTCCTTCATCGCCACTGTTATTAACGTGGTAGTCGGAGTTATCGTTGGTGGAATTTGGGGGA
TCTCAAAATCTATCGACCGTATCATGATGGAAGTTTATAACGTTATTTCAAACATTCCATTTATGTTGATCGTTATCGTC
TTGACTTACTCAATGGGATCTGGATTCTGGAACTTGATTCTTGCCATGTCCTTAACTGGATGGATCGGAATTGCTTATAC
CATTCGTGTCCAAATCATGCGTTACCGTGATTTGGAGTACAACCTTGCCAGCCGAACATTAGGAACACCAACAATGAAAA
TTGTTACGAAAAATATTTTACCTCAATTGGTATCTGTTATCGTGACACAAACATCACAGTTGCTTCCAAGCTTTATTTCT
TACGAAGCCTTCCTTTCCTTCTTCGGACTTGGTCTTCCAATCACAGTTCCAAGTTTGGGCCGGTTGATTTCTGACTATTC
TCAAAACGTAACTACAAATGCTTACCTATTCTGGATTCCGCTTACTGTTTTGATTTTAGTATCCTTGTCATTCTTTATCG
TCGGACAAAACTTGGCCGATGCTAGCGACCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-84)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

78.896

100

0.789
  amiD Streptococcus thermophilus LMG 18311

77.597

100

0.776
  amiD Streptococcus thermophilus LMD-9

77.597

100

0.776

Multiple sequence alignment