Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   HMPREF0833_RS09695 Genome accession   NC_015678
Coordinates   2058407..2059474 (+) Length   355 a.a.
NCBI ID   WP_013904709.1    Uniprot ID   F8DIA9
Organism   Streptococcus parasanguinis ATCC 15912     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2053407..2064474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0833_RS09680 (HMPREF0833_11934) amiA3 2053911..2055896 (+) 1986 WP_013904706.1 peptide ABC transporter substrate-binding protein Regulator
  HMPREF0833_RS09685 (HMPREF0833_11935) amiC 2055970..2057469 (+) 1500 WP_013904707.1 ABC transporter permease Regulator
  HMPREF0833_RS09690 (HMPREF0833_11936) amiD 2057469..2058395 (+) 927 WP_013904708.1 oligopeptide ABC transporter permease OppC Regulator
  HMPREF0833_RS09695 (HMPREF0833_11937) amiE 2058407..2059474 (+) 1068 WP_013904709.1 ABC transporter ATP-binding protein Regulator
  HMPREF0833_RS09700 (HMPREF0833_11938) amiF 2059485..2060411 (+) 927 WP_003010296.1 ATP-binding cassette domain-containing protein Regulator
  HMPREF0833_RS10505 - 2060473..2061631 (-) 1159 Protein_1890 transposase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39516.10 Da        Isoelectric Point: 4.6328

>NTDB_id=41414 HMPREF0833_RS09695 WP_013904709.1 2058407..2059474(+) (amiE) [Streptococcus parasanguinis ATCC 15912]
MTSNNNIILSAQDIVVEFDVRDRVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFTGMLEDNGRIAQGSIKYRGQEL
TDLKSNKDWENIRGSKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKTAKEAREMALDYMEKVGIPDAERRFDEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQKEYQFTVIFITHDLGVVASIADKVAVMYAGEIVE
FGKVEEIFYDPKHPYTWSLLSSLPQLSTSDGDLYSIPGTPPSLYAPIKGDAFALRSDYAMQIDFEEEAPAFKVTDTHWAK
TWLLHPDAPTVHKPEVIENLHEKIGSKMGFTHMTE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=41414 HMPREF0833_RS09695 WP_013904709.1 2058407..2059474(+) (amiE) [Streptococcus parasanguinis ATCC 15912]
ATGACATCAAATAACAATATTATTTTATCTGCTCAAGATATCGTAGTGGAATTTGACGTGCGCGATCGCGTACTGACAGC
TATTCGTGGCGTATCGCTTGAGCTAGTCGAAGGTGAAGTTCTTGCCTTAGTTGGTGAGTCAGGTTCAGGGAAATCAGTTT
TGACAAAAACGTTCACCGGAATGTTAGAAGATAACGGCCGTATTGCCCAAGGTTCGATTAAATATCGTGGTCAAGAATTG
ACAGATTTGAAATCGAATAAAGATTGGGAAAATATTCGTGGATCTAAGATCGCTACAATTTTCCAAGACCCAATGACAAG
TTTGGATCCAATCAATACAATTGGCTCACAAATTACCGAAGTCATTATCAAACACCAAGGGAAAACAGCTAAAGAAGCCA
GAGAAATGGCTTTGGACTATATGGAAAAAGTTGGAATTCCAGATGCTGAACGTCGTTTTGATGAGTATCCATTCCAATAT
TCAGGTGGGATGCGTCAACGGATCGTTATTGCCATCGCCTTGGCCTGCCGCCCAGATATCTTAATCTGTGACGAACCAAC
AACAGCCCTTGATGTAACCATTCAAGCGCAAATCATTGATTTGTTGAAATCCCTTCAAAAAGAATACCAATTTACAGTTA
TCTTTATCACCCACGACTTAGGTGTGGTTGCAAGTATTGCAGATAAAGTAGCCGTTATGTATGCTGGAGAAATTGTTGAG
TTTGGTAAGGTAGAAGAAATTTTCTACGATCCAAAACATCCATACACATGGAGCTTGCTTTCAAGCTTGCCTCAATTGTC
AACCTCAGATGGTGATCTTTACTCTATTCCAGGGACTCCGCCATCATTGTATGCTCCAATCAAAGGAGATGCCTTCGCAC
TTCGTTCAGACTATGCAATGCAGATTGATTTTGAAGAAGAGGCACCGGCTTTCAAAGTGACCGATACTCACTGGGCTAAG
ACATGGTTGCTCCATCCAGATGCACCAACAGTTCATAAACCAGAAGTAATCGAAAACCTTCACGAAAAGATTGGCTCAAA
AATGGGCTTCACTCACATGACAGAATAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F8DIA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

83.003

99.437

0.825
  amiE Streptococcus thermophilus LMG 18311

82.153

99.437

0.817
  amiE Streptococcus thermophilus LMD-9

82.153

99.437

0.817
  oppD Streptococcus mutans UA159

57.391

97.183

0.558

Multiple sequence alignment