Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H4P48_RS08510 Genome accession   NZ_CP060073
Coordinates   1813949..1815376 (-) Length   475 a.a.
NCBI ID   WP_021570852.1    Uniprot ID   -
Organism   Escherichia coli strain G4/9     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1808949..1820376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4P48_RS08480 (H4P48_08480) yeeZ 1809004..1809828 (+) 825 WP_021570854.1 SDR family oxidoreductase -
  H4P48_RS08485 (H4P48_08485) yeeY 1809874..1810803 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  H4P48_RS08490 (H4P48_08490) yoeI 1811018..1811080 (+) 63 WP_010723108.1 membrane protein YoeI -
  H4P48_RS08495 (H4P48_08495) plaP 1811070..1812428 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  H4P48_RS08500 (H4P48_08500) tsuA 1812607..1813665 (+) 1059 WP_024241668.1 thiosulfate utilization transporter TsuA/YeeE -
  H4P48_RS08505 (H4P48_08505) tsuB 1813679..1813906 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  H4P48_RS08510 (H4P48_08510) sbcB 1813949..1815376 (-) 1428 WP_021570852.1 exodeoxyribonuclease I Machinery gene
  H4P48_RS08515 (H4P48_08515) dacD 1815585..1816751 (+) 1167 WP_021570851.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  H4P48_RS08520 (H4P48_08520) sbmC 1816870..1817343 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  H4P48_RS08525 (H4P48_08525) yeeA 1817541..1818599 (+) 1059 WP_021570850.1 FUSC family protein -
  H4P48_RS08530 (H4P48_08530) tmaR 1818771..1819100 (+) 330 WP_000450409.1 DUF496 family protein -
  H4P48_RS08535 (H4P48_08535) - 1819201..1819392 (-) 192 Protein_1701 EutP/PduV family microcompartment system protein -
  H4P48_RS08540 (H4P48_08540) cobU 1819559..1820104 (+) 546 WP_000973155.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54486.83 Da        Isoelectric Point: 5.6070

>NTDB_id=413057 H4P48_RS08510 WP_021570852.1 1813949..1815376(-) (sbcB) [Escherichia coli strain G4/9]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFTARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPVFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=413057 H4P48_RS08510 WP_021570852.1 1813949..1815376(-) (sbcB) [Escherichia coli strain G4/9]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCTG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTACCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTTGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAACACCGCCGCCAGGTATTCACACCCGTGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment