Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | GRF56_RS05645 | Genome accession | NZ_CP047155 |
| Coordinates | 1170933..1171253 (-) | Length | 106 a.a. |
| NCBI ID | WP_111900685.1 | Uniprot ID | - |
| Organism | Aeromonas veronii strain AVNIH1 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1165933..1176253
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GRF56_RS05625 (GRF56_05625) | - | 1166330..1167028 (-) | 699 | WP_111900682.1 | DnaT-like ssDNA-binding domain-containing protein | - |
| GRF56_RS05630 (GRF56_05630) | - | 1167269..1168240 (+) | 972 | WP_111900683.1 | response regulator | - |
| GRF56_RS05635 (GRF56_05635) | - | 1168315..1169712 (-) | 1398 | WP_021231963.1 | peptide MFS transporter | - |
| GRF56_RS05640 (GRF56_05640) | galU | 1169926..1170837 (-) | 912 | WP_111900684.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| GRF56_RS05645 (GRF56_05645) | comEA/comE1 | 1170933..1171253 (-) | 321 | WP_111900685.1 | ComEA family DNA-binding protein | Machinery gene |
| GRF56_RS05650 (GRF56_05650) | pta | 1171631..1173811 (-) | 2181 | WP_005339119.1 | phosphate acetyltransferase | - |
| GRF56_RS05655 (GRF56_05655) | - | 1173867..1175069 (-) | 1203 | WP_005349210.1 | acetate kinase | - |
| GRF56_RS05660 (GRF56_05660) | yfbV | 1175374..1175814 (+) | 441 | WP_043851809.1 | terminus macrodomain insulation protein YfbV | - |
Sequence
Protein
Download Length: 106 a.a. Molecular weight: 11272.29 Da Isoelectric Point: 9.9853
>NTDB_id=411084 GRF56_RS05645 WP_111900685.1 1170933..1171253(-) (comEA/comE1) [Aeromonas veronii strain AVNIH1]
MLMKKLSAVMLLACLPLFSQPVLAVDKAAPKQTTTTAVAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK
MLMKKLSAVMLLACLPLFSQPVLAVDKAAPKQTTTTAVAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK
Nucleotide
Download Length: 321 bp
>NTDB_id=411084 GRF56_RS05645 WP_111900685.1 1170933..1171253(-) (comEA/comE1) [Aeromonas veronii strain AVNIH1]
ATGCTGATGAAGAAGCTCTCTGCTGTCATGCTGCTGGCCTGCTTGCCCCTGTTCAGCCAACCTGTGCTGGCCGTAGATAA
GGCAGCGCCCAAGCAAACAACCACGACCGCGGTTGCCAAGGAGTCCGGCAAGCTGAATATCAATACCGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGTGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACAGGGACATGATAATAGTCAAATA
A
ATGCTGATGAAGAAGCTCTCTGCTGTCATGCTGCTGGCCTGCTTGCCCCTGTTCAGCCAACCTGTGCTGGCCGTAGATAA
GGCAGCGCCCAAGCAAACAACCACGACCGCGGTTGCCAAGGAGTCCGGCAAGCTGAATATCAATACCGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGTGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACAGGGACATGATAATAGTCAAATA
A
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
46.018 |
100 |
0.491 |
| comEA | Vibrio cholerae strain A1552 |
47.17 |
100 |
0.472 |
| comEA | Vibrio cholerae C6706 |
47.17 |
100 |
0.472 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
43.299 |
91.509 |
0.396 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
65.625 |
60.377 |
0.396 |
| comEA | Acinetobacter baylyi ADP1 |
51.316 |
71.698 |
0.368 |
| comEA | Legionella pneumophila strain ERS1305867 |
39.394 |
93.396 |
0.368 |
| comEA | Legionella pneumophila str. Paris |
39.394 |
93.396 |
0.368 |