Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   GPZ88_RS03290 Genome accession   NZ_CP046919
Coordinates   638195..639571 (-) Length   458 a.a.
NCBI ID   WP_240915106.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_G2     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 633195..644571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPZ88_RS03265 (GPZ88_03240) - 634315..634947 (-) 633 WP_166043382.1 thiamine diphosphokinase -
  GPZ88_RS03270 (GPZ88_03245) rpe 634940..635602 (-) 663 WP_006531895.1 ribulose-phosphate 3-epimerase -
  GPZ88_RS03275 (GPZ88_03250) rsgA 635609..636481 (-) 873 WP_006531894.1 ribosome small subunit-dependent GTPase A -
  GPZ88_RS03285 (GPZ88_03260) comE/comE2 636800..637534 (-) 735 WP_052071091.1 LytR/AlgR family response regulator transcription factor Regulator
  GPZ88_RS03290 (GPZ88_03265) comD/comD3 638195..639571 (-) 1377 WP_240915106.1 sensor histidine kinase Regulator
  GPZ88_RS03295 (GPZ88_03270) comD/comD3 639568..640650 (-) 1083 WP_240915107.1 sensor histidine kinase Regulator
  GPZ88_RS10350 comD/comD2 640943..641773 (-) 831 WP_240915108.1 sensor histidine kinase Regulator
  GPZ88_RS03305 (GPZ88_03280) - 642677..642970 (-) 294 WP_074626913.1 bacteriocin immunity protein -
  GPZ88_RS03310 (GPZ88_03285) - 642998..643303 (-) 306 WP_158914537.1 bacteriocin immunity protein -
  GPZ88_RS03315 (GPZ88_03290) - 643316..643465 (-) 150 WP_039696228.1 hypothetical protein -
  GPZ88_RS03320 (GPZ88_03295) comC/comC1 643728..643880 (+) 153 WP_158914538.1 hypothetical protein Regulator

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 52918.19 Da        Isoelectric Point: 6.6143

>NTDB_id=409404 GPZ88_RS03290 WP_240915106.1 638195..639571(-) (comD/comD3) [Streptococcus ruminicola strain CNU_G2]
MIEIVVFIITMLLNFVGFVIVGILFQQITKVKLTFLEWVLIIIFLQAVSFFMNPQKYSMVALVLMKDISVIFCLLSVSFH
HNPKIGIRYHIFYALYPINLYMILHEVYCYIIFAIFSIQLTSLTMTSPSVGKMIGMITAVIIPPIFYYLISKWLNIDISN
VRKTLKNYLSARALRFVNVLLLLFYPGMECFGAIAPFEKMSMNRNIYRAVIFIYFILLFIFLFYLNFRHGQEQKEELLRN
QEMELTALENYSKHVESLYQEVRSFRHDYANVLMSLKMGIDQGNLDDIKKIYEEITADSTKLVKNNKFDLTRLANITDSG
VKSLMSAKFLQAENQGIEISLEVSEKMGTPKIPLISYIRILSILFDNAIEGALESAEPKISVANFYQDGDFVFMIENSTK
EKSVDLTKIFERGYSTKGDNRGLGLATLMDFQDDYENLSVETRSSDYTFTQVVRIFEA

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=409404 GPZ88_RS03290 WP_240915106.1 638195..639571(-) (comD/comD3) [Streptococcus ruminicola strain CNU_G2]
ATGATTGAGATTGTTGTATTTATTATTACAATGCTTTTGAATTTTGTGGGATTCGTTATAGTAGGGATTCTATTTCAACA
AATAACAAAGGTTAAATTAACGTTTTTAGAATGGGTATTGATAATCATATTTCTTCAAGCAGTTTCTTTTTTTATGAATC
CTCAGAAATATTCAATGGTTGCTTTAGTACTAATGAAAGATATTTCAGTGATTTTTTGTTTACTATCAGTTTCTTTTCAT
CATAATCCCAAAATAGGAATAAGATATCACATTTTTTATGCCTTGTATCCAATTAATCTTTATATGATTCTACACGAAGT
TTATTGTTATATTATATTTGCAATTTTTTCAATACAATTGACCTCACTTACAATGACTTCACCATCAGTAGGAAAAATGA
TTGGTATGATAACTGCAGTTATTATTCCACCAATTTTTTACTATCTAATATCAAAGTGGCTTAACATTGATATTTCAAAT
GTCAGAAAAACGCTCAAGAATTATCTTAGTGCAAGAGCGCTTAGATTTGTTAATGTATTATTACTACTTTTCTATCCAGG
AATGGAATGTTTTGGTGCCATAGCCCCTTTTGAGAAAATGTCGATGAATAGAAATATTTATAGGGCTGTTATTTTTATCT
ACTTCATCCTTCTTTTCATTTTCCTCTTTTACCTCAACTTCCGCCATGGTCAGGAGCAAAAAGAAGAACTGTTGCGTAAT
CAGGAAATGGAGCTGACAGCGCTTGAAAATTATAGCAAGCATGTGGAAAGTTTGTATCAGGAAGTTAGAAGCTTCAGGCA
TGATTACGCTAACGTCCTGATGAGTTTAAAAATGGGGATTGATCAAGGCAATCTGGATGATATCAAGAAAATTTATGAGG
AAATCACGGCTGATTCGACGAAGCTAGTCAAGAATAATAAATTTGATCTGACTCGCCTGGCTAACATCACAGATAGCGGC
GTCAAAAGTCTCATGTCTGCCAAGTTTTTGCAAGCTGAAAATCAGGGCATTGAGATTAGCTTAGAAGTATCAGAAAAAAT
GGGAACTCCAAAGATTCCATTGATTTCCTATATCCGAATCCTATCGATTCTGTTTGATAATGCTATAGAAGGAGCTTTGG
AATCTGCGGAGCCAAAAATCTCAGTTGCTAACTTTTACCAAGATGGTGACTTTGTTTTCATGATTGAGAATTCAACCAAA
GAAAAATCGGTGGATTTAACTAAGATTTTTGAGCGTGGCTACTCAACCAAGGGAGACAATCGTGGACTTGGTCTAGCCAC
ACTAATGGATTTTCAAGATGACTACGAAAATTTGTCGGTTGAAACCCGCAGTTCAGATTATACATTTACACAAGTTGTCC
GAATTTTTGAGGCATAA

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(358-455)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

96.507

100

0.965
  comD/comD2 Streptococcus equinus JB1

81.09

68.122

0.552

Multiple sequence alignment