Detailed information NTG0409398

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: GPZ88_RS02235
• Genome accession: NZ_CP046919
• Coordinates: 421337..421927 (-)
• Length: 196 a.a.
• NCBI ID: WP_039696423.1
• Uniprot ID: A0A091BS49
• Organism: Streptococcus ruminicola strain CNU_G2
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 416337..426927

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPZ88_RS02205 (GPZ88_02185)	-	416458..417222 (-)	765	WP_039696427.1	ABC transporter ATP-binding protein	-
GPZ88_RS02210 (GPZ88_02190)	-	417222..418175 (-)	954	WP_166043246.1	branched-chain amino acid ABC transporter permease	-
GPZ88_RS02215 (GPZ88_02195)	-	418179..419063 (-)	885	WP_039696425.1	branched-chain amino acid ABC transporter permease	-
GPZ88_RS02220 (GPZ88_02200)	-	419121..420299 (-)	1179	WP_074799060.1	ABC transporter substrate-binding protein	-
GPZ88_RS02225 (GPZ88_02205)	-	420411..420662 (-)	252	WP_020917301.1	YlbG family protein	-
GPZ88_RS02230 (GPZ88_02210)	-	420655..421095 (-)	441	WP_039696424.1	YlbF family regulator	-
GPZ88_RS02235 (GPZ88_02215)	clpP	421337..421927 (-)	591	WP_039696423.1	ATP-dependent Clp protease proteolytic subunit	Regulator
GPZ88_RS02240 (GPZ88_02220)	-	422056..422949 (-)	894	WP_157629291.1	DMT family transporter	-
GPZ88_RS02245 (GPZ88_02225)	-	423063..423932 (+)	870	WP_074626285.1	LysR family transcriptional regulator	-
GPZ88_RS02250 (GPZ88_02230)	upp	424003..424632 (-)	630	WP_166043247.1	uracil phosphoribosyltransferase	-
GPZ88_RS02255 (GPZ88_02235)	-	424782..425945 (-)	1164	WP_166043249.1	MalY/PatB family protein	-

Sequence

Protein

• Length: 196 a.a.
• Molecular weight: 21510.45 Da
• Isoelectric Point: 4.3383

>NTDB_id=409398 GPZ88_RS02235 WP_039696423.1 421337..421927(-) (clpP) [Streptococcus ruminicola strain CNU_G2]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKTRQNLEQILADNSGQ
SLEKVHADAERDNWMSAQETLEYGFIDEIMVNNELN

Nucleotide

• Length: 591 bp

>NTDB_id=409398 GPZ88_RS02235 WP_039696423.1 421337..421927(-) (clpP) [Streptococcus ruminicola strain CNU_G2]
ATGATTCCTGTAGTTATTGAACAAACAAGCCGCGGTGAACGCTCATATGATATTTACTCACGTCTTTTGAAAGATCGTAT
CATTATGCTGACTGGACCAGTTGAAGACAATATGGCAAATTCTATTATTGCTCAACTATTGTTCCTTGATGCACAAGATA
ATACAAAAGATATTTACCTTTATGTTAATACACCTGGTGGATCAGTTTCAGCTGGTCTTGCTATTGTAGATACAATGAAC
TTCATTAAATCAGATGTTCAAACTATCGTTATGGGTATGGCAGCATCAATGGGAACAATCATTGCTTCATCAGGTACAAA
AGGTAAACGATTCATGTTGCCAAACGCTGAATATATGATTCACCAACCAATGGGTGGTACTGGTGGCGGTACTCAACAAA
GCGATATGGCTATTGCTGCTGAACACCTTTTGAAAACACGTCAAAACTTGGAACAAATTTTGGCTGACAATTCAGGTCAA
AGTTTGGAAAAAGTTCACGCTGATGCTGAACGTGATAACTGGATGAGCGCTCAAGAAACTCTTGAATATGGCTTCATCGA
TGAAATCATGGTTAACAACGAATTGAACTAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (11-192)

3D structure

• AlphaFold DB: A0A091BS49

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Streptococcus thermophilus LMG 18311	95.897	99.49	0.954
clpP	Streptococcus thermophilus LMD-9	95.897	99.49	0.954
clpP	Streptococcus pneumoniae Rx1	93.367	100	0.934
clpP	Streptococcus pneumoniae D39	93.367	100	0.934
clpP	Streptococcus pneumoniae R6	93.367	100	0.934
clpP	Streptococcus pneumoniae TIGR4	93.367	100	0.934
clpP	Streptococcus pyogenes JRS4	89.286	100	0.893
clpP	Streptococcus pyogenes MGAS315	89.286	100	0.893
clpP	Streptococcus mutans UA159	88.265	100	0.883
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	87.755	100	0.878
clpP	Lactococcus lactis subsp. cremoris KW2	87.245	100	0.872
clpP	Bacillus subtilis subsp. subtilis str. 168	58.247	98.98	0.577
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.421	96.939	0.566