Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   GP482_RS04635 Genome accession   NZ_CP046875
Coordinates   945695..947668 (-) Length   657 a.a.
NCBI ID   WP_039696673.1    Uniprot ID   A0AAE6UYV6
Organism   Streptococcus ruminicola strain CNU_77-61     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 940695..952668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GP482_RS04615 (GP482_04615) amiF 941201..942127 (-) 927 WP_039696677.1 ATP-binding cassette domain-containing protein Regulator
  GP482_RS04620 (GP482_04620) amiE 942120..943190 (-) 1071 WP_039696676.1 ABC transporter ATP-binding protein Regulator
  GP482_RS04625 (GP482_04625) amiD 943199..944125 (-) 927 WP_158914123.1 oligopeptide ABC transporter permease OppC Regulator
  GP482_RS04630 (GP482_04630) amiC 944125..945627 (-) 1503 WP_074799225.1 ABC transporter permease Regulator
  GP482_RS04635 (GP482_04635) amiA 945695..947668 (-) 1974 WP_039696673.1 peptide ABC transporter substrate-binding protein Regulator
  GP482_RS04640 (GP482_04640) - 948024..948359 (-) 336 WP_039696672.1 metal-sulfur cluster assembly factor -
  GP482_RS04645 (GP482_04645) rpoD 948382..949491 (-) 1110 WP_024343868.1 RNA polymerase sigma factor RpoD -
  GP482_RS04650 (GP482_04650) dnaG 949500..951308 (-) 1809 WP_278007835.1 DNA primase -
  GP482_RS04655 (GP482_04655) mscL 951426..951809 (+) 384 WP_158914125.1 large conductance mechanosensitive channel protein MscL -
  GP482_RS04660 (GP482_04660) rpsU 951882..952058 (-) 177 WP_000048058.1 30S ribosomal protein S21 -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 73446.32 Da        Isoelectric Point: 5.6623

>NTDB_id=409119 GP482_RS04635 WP_039696673.1 945695..947668(-) (amiA) [Streptococcus ruminicola strain CNU_77-61]
MFMKKYLTVAGVALLSVSLLQGCSNSKSTKQKSNVYSYVYVSDPNTLDYTASGRVTTSSVTTQGIDGLLENDKYGNLVPS
LAKDWKVSADGLTYTYKLRKGVMWYTSDGEEYAEVTANDFVTGLKHAADKKSDALYIVQNSIKGLDDYVSGATKDFSTVG
VKALDKYTVQYTLNKPETYWNSKTTYGVLQPVNKDFLKAKGKNFGSVDPSSILYNGPFILKSLTSKSSIEFDKNENYWDA
KHVKLDGVKLTYYDGSDPESLYKNFEKGNYSCSRLYPTKPDFKKIEKNHKNEINYSLQDQSTYFVVFNLNRKAYDFTSKN
SDTQKNDTHEAILNKDFRQAVTFAFNRAAYNSQNVGQEASTKSLRSMFVPPKFVSSDGKDFGDYVKDELGDNPTWKDVDL
SDAKDGLYNVDKAKAAFAKAKSTLQNEGVQFPIHLDFPVDQTRDITTQQANSFKQSVEASLGKDNVVVDIQKESEEDYQR
TGYFAESADQKDYDLSQDSGWSPDYDDPSTYLDILNSDTGTSIKNSGIDSSTDEGKEVAQRVGLDQFNKLVTDANNVTDD
VTARYTDYAKAQAWLTDSAIIIPTTSLGGSPSVSKVVPFSASYSTSGVKGSECYKYYQLQDKPVTVKQYKKALNSWKKAK
DKSNTEYQEKLSEHIEK

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=409119 GP482_RS04635 WP_039696673.1 945695..947668(-) (amiA) [Streptococcus ruminicola strain CNU_77-61]
ATGTTTATGAAAAAATATTTAACTGTCGCAGGAGTTGCACTTTTATCGGTTTCGCTTTTACAAGGATGTTCTAATTCAAA
ATCGACTAAGCAAAAATCAAATGTTTATTCTTATGTCTATGTTTCTGATCCGAATACACTAGATTATACAGCATCAGGTC
GAGTAACTACATCATCTGTAACAACTCAGGGAATAGATGGTTTGCTAGAGAATGATAAATATGGTAATTTAGTGCCTTCT
CTTGCAAAAGATTGGAAAGTTTCAGCTGATGGTTTAACTTATACCTATAAGTTGAGAAAAGGCGTTATGTGGTACACTTC
TGATGGGGAAGAATATGCAGAAGTTACGGCGAATGATTTTGTTACAGGATTAAAGCATGCAGCTGATAAGAAATCAGACG
CCCTTTACATTGTGCAAAATTCAATAAAAGGTTTGGATGATTATGTTAGTGGTGCTACAAAAGATTTTTCAACTGTTGGC
GTTAAGGCGTTAGACAAATATACTGTTCAGTATACTTTGAATAAACCTGAAACCTATTGGAATTCTAAGACGACCTATGG
TGTACTTCAACCAGTTAATAAAGATTTCTTGAAGGCAAAGGGTAAAAATTTTGGCTCTGTAGATCCATCTAGTATTCTTT
ATAATGGTCCGTTTATTTTGAAATCTTTAACTTCTAAATCTTCAATTGAGTTTGATAAAAATGAAAATTACTGGGATGCT
AAGCACGTAAAACTTGATGGGGTTAAACTAACTTATTATGATGGTTCAGATCCAGAATCCCTTTATAAAAATTTTGAAAA
AGGAAATTACAGCTGTTCAAGACTATACCCAACAAAACCAGATTTTAAGAAAATTGAAAAGAACCATAAAAATGAAATTA
ATTACTCATTACAGGATCAATCAACCTATTTTGTTGTCTTTAATTTGAATCGTAAAGCTTATGATTTTACTTCAAAAAAC
AGTGATACTCAAAAAAATGATACCCATGAAGCTATTTTAAATAAAGACTTCCGTCAAGCTGTTACTTTTGCATTTAACAG
AGCAGCCTATAATTCACAAAATGTTGGTCAAGAGGCTTCAACTAAATCACTTCGTAGTATGTTTGTGCCACCAAAATTTG
TGTCTTCTGATGGCAAAGATTTTGGTGATTATGTTAAAGATGAGTTAGGTGACAATCCAACTTGGAAAGATGTTGATCTT
TCAGATGCTAAAGATGGATTATACAATGTTGATAAGGCAAAAGCAGCATTCGCTAAAGCAAAATCTACATTGCAAAATGA
AGGTGTTCAATTCCCAATTCACCTAGACTTTCCTGTAGATCAAACAAGAGATATTACGACACAACAAGCTAATTCATTTA
AGCAATCTGTTGAAGCATCACTCGGTAAGGATAACGTCGTTGTTGATATTCAAAAAGAAAGTGAAGAAGATTATCAACGT
ACAGGATATTTTGCAGAATCAGCTGATCAAAAGGATTATGATTTGTCTCAAGACTCTGGATGGAGTCCTGATTATGATGA
CCCTTCCACTTATCTTGATATCTTAAATTCAGATACAGGTACTTCAATTAAAAATAGTGGTATTGATTCATCAACTGATG
AAGGTAAAGAAGTTGCTCAAAGAGTAGGATTAGATCAGTTCAATAAATTAGTTACGGATGCAAATAATGTTACTGACGAT
GTAACTGCCCGTTATACAGATTATGCAAAAGCTCAAGCATGGTTGACGGACAGTGCTATTATTATACCAACGACATCTTT
AGGTGGTAGCCCATCAGTTTCAAAAGTTGTTCCGTTTTCAGCTTCTTATTCAACATCTGGAGTTAAAGGTAGTGAATGTT
ACAAATATTATCAATTGCAAGATAAGCCTGTTACGGTTAAACAATACAAAAAAGCTTTAAATAGTTGGAAAAAGGCTAAA
GATAAATCAAACACAGAATATCAAGAAAAGCTTTCTGAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

53.394

100

0.539
  amiA3 Streptococcus thermophilus LMG 18311

51.205

100

0.518
  amiA3 Streptococcus thermophilus LMD-9

51.054

100

0.516

Multiple sequence alignment