Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   GP482_RS04630 Genome accession   NZ_CP046875
Coordinates   944125..945627 (-) Length   500 a.a.
NCBI ID   WP_074799225.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_77-61     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 939125..950627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GP482_RS04610 (GP482_04610) - 939880..941034 (-) 1155 WP_074560552.1 DUF1972 domain-containing protein -
  GP482_RS04615 (GP482_04615) amiF 941201..942127 (-) 927 WP_039696677.1 ATP-binding cassette domain-containing protein Regulator
  GP482_RS04620 (GP482_04620) amiE 942120..943190 (-) 1071 WP_039696676.1 ABC transporter ATP-binding protein Regulator
  GP482_RS04625 (GP482_04625) amiD 943199..944125 (-) 927 WP_158914123.1 oligopeptide ABC transporter permease OppC Regulator
  GP482_RS04630 (GP482_04630) amiC 944125..945627 (-) 1503 WP_074799225.1 ABC transporter permease Regulator
  GP482_RS04635 (GP482_04635) amiA 945695..947668 (-) 1974 WP_039696673.1 peptide ABC transporter substrate-binding protein Regulator
  GP482_RS04640 (GP482_04640) - 948024..948359 (-) 336 WP_039696672.1 metal-sulfur cluster assembly factor -
  GP482_RS04645 (GP482_04645) rpoD 948382..949491 (-) 1110 WP_024343868.1 RNA polymerase sigma factor RpoD -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 55951.74 Da        Isoelectric Point: 10.2192

>NTDB_id=409118 GP482_RS04630 WP_074799225.1 944125..945627(-) (amiC) [Streptococcus ruminicola strain CNU_77-61]
MKKYVGMRILRSLVSILLVTTLTYGIIYALVPRHLIFRQDPNYNKMVTTADKRINYENQIYSKTGYIEYKDSKDLSKIAS
TIDSKVTVDNTKKNKKVYQDCIDKIGKGWKLYQFPESKKFYAVREIPLYERVLKFYSNLIVIDHPWKIKDPSNPNLKRYV
RFENDPAIGPALVGSGTEHKYLIYFNGAFPFIHQHIVTMNLGISYPTYANVPILQVINQGQGKAELKEVKFPTGKTKMSS
VDIYTRTYKSPKDADAMAVNNFGKGDAYTATKSIYSDPSMVSNSVRIGVIGVLISYLLGLPIGLLMARFKNGFFDRFSTG
VVTFLLAVPSIAIIYAIRFLGSAIGLPDAFPTLGAHDWRSYVLPAFILGFLSIPGIVVWFRRYVVDLQNSDFVKFARAKG
LSENEISKKHLFKQAMVPIVNGIPEAILGTIVGATLTETIFAFPGMGKMLIDSIKATNNSMVVGLVFLFTSLSIISLLLG
DLLMVLLDPRIKLSSKGGKK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=409118 GP482_RS04630 WP_074799225.1 944125..945627(-) (amiC) [Streptococcus ruminicola strain CNU_77-61]
ATGAAAAAATATGTTGGAATGCGAATTCTGCGTTCGCTGGTATCGATTTTATTAGTAACGACATTAACTTACGGTATTAT
ATACGCTTTAGTCCCAAGACACCTTATTTTTAGACAAGATCCTAATTATAATAAAATGGTGACAACGGCTGACAAGCGAA
TTAATTATGAAAATCAAATTTATAGTAAGACAGGTTATATTGAGTACAAAGATAGTAAAGATTTAAGTAAGATTGCTTCT
ACAATAGATAGTAAAGTAACCGTTGATAATACAAAAAAGAATAAAAAAGTTTATCAAGATTGTATCGATAAAATTGGTAA
AGGATGGAAACTTTACCAATTTCCAGAAAGTAAAAAATTTTATGCAGTACGCGAAATTCCACTCTACGAAAGAGTACTGA
AATTTTACTCTAATTTGATTGTGATTGATCATCCTTGGAAGATTAAGGATCCATCTAATCCAAATTTAAAACGTTATGTT
CGTTTTGAAAATGATCCTGCAATAGGTCCAGCCTTGGTTGGTTCAGGAACGGAGCATAAGTACTTGATTTACTTTAATGG
TGCCTTTCCATTTATTCATCAGCATATTGTGACGATGAATCTTGGTATTTCTTATCCAACTTATGCTAATGTACCGATTT
TACAAGTAATTAATCAAGGTCAAGGAAAAGCAGAATTAAAAGAGGTTAAATTTCCTACAGGTAAAACTAAAATGAGTTCG
GTAGATATCTATACACGAACTTACAAATCACCTAAAGACGCTGATGCAATGGCAGTCAATAATTTTGGAAAGGGTGATGC
TTATACTGCGACAAAAAGTATTTACTCAGATCCTTCAATGGTGTCCAATTCAGTTCGAATTGGTGTAATCGGTGTACTTA
TTTCATACTTGTTAGGGTTACCGATTGGACTTTTAATGGCTAGATTTAAGAATGGTTTTTTTGATCGTTTTTCAACGGGC
GTTGTTACGTTTTTGCTAGCTGTTCCTAGTATTGCTATTATTTATGCAATTCGTTTTCTTGGTTCAGCAATTGGATTGCC
AGATGCTTTCCCAACTCTAGGAGCCCACGATTGGCGTTCTTATGTATTGCCAGCATTTATTTTAGGATTTTTAAGTATTC
CAGGAATCGTCGTTTGGTTTAGACGTTATGTTGTTGATTTACAAAATAGTGATTTTGTGAAATTCGCTAGAGCGAAAGGA
TTATCTGAAAACGAAATTTCGAAGAAACACTTGTTTAAGCAAGCTATGGTTCCGATTGTTAATGGGATACCGGAGGCTAT
TTTAGGGACAATTGTAGGAGCTACTTTGACTGAAACGATTTTTGCTTTTCCTGGTATGGGGAAAATGTTGATTGATTCAA
TCAAGGCTACTAATAACTCGATGGTTGTAGGTTTAGTTTTCTTATTTACCAGCTTATCAATTATTTCTCTCTTACTAGGT
GACCTTTTAATGGTTTTATTGGACCCTCGAATTAAGTTATCATCAAAAGGAGGTAAAAAATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

63.126

99.8

0.63
  amiC Streptococcus salivarius strain HSISS4

62.725

99.8

0.626
  amiC Streptococcus thermophilus LMG 18311

62.725

99.8

0.626

Multiple sequence alignment