Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   GP482_RS04625 Genome accession   NZ_CP046875
Coordinates   943199..944125 (-) Length   308 a.a.
NCBI ID   WP_158914123.1    Uniprot ID   A0AAE6R4C4
Organism   Streptococcus ruminicola strain CNU_77-61     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 938199..949125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GP482_RS04605 (GP482_04605) - 938958..939890 (-) 933 WP_158914121.1 glycosyltransferase family 2 protein -
  GP482_RS04610 (GP482_04610) - 939880..941034 (-) 1155 WP_074560552.1 DUF1972 domain-containing protein -
  GP482_RS04615 (GP482_04615) amiF 941201..942127 (-) 927 WP_039696677.1 ATP-binding cassette domain-containing protein Regulator
  GP482_RS04620 (GP482_04620) amiE 942120..943190 (-) 1071 WP_039696676.1 ABC transporter ATP-binding protein Regulator
  GP482_RS04625 (GP482_04625) amiD 943199..944125 (-) 927 WP_158914123.1 oligopeptide ABC transporter permease OppC Regulator
  GP482_RS04630 (GP482_04630) amiC 944125..945627 (-) 1503 WP_074799225.1 ABC transporter permease Regulator
  GP482_RS04635 (GP482_04635) amiA 945695..947668 (-) 1974 WP_039696673.1 peptide ABC transporter substrate-binding protein Regulator
  GP482_RS04640 (GP482_04640) - 948024..948359 (-) 336 WP_039696672.1 metal-sulfur cluster assembly factor -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34956.03 Da        Isoelectric Point: 8.8338

>NTDB_id=409117 GP482_RS04625 WP_158914123.1 943199..944125(-) (amiD) [Streptococcus ruminicola strain CNU_77-61]
MEKIDKKQFEFVGLDSSASEIIDAPTYSYWKSVFKQFFSKKSTFFMLAILIAIIFMSFVYPFFVHCNFNDVSNINDFSKR
YIWPNSQYWFGTDKDGRSLFDCVWYGARNSILISVLATVINIILGVVIGGIWGVSKTVDTIMIEVYNVVSNIPQLLIIMV
LTYSLGAGFWNMILAFCITGWIGIAYSIRVQILRYRDLEYNLASQILGTSKFRIVVKNLLPQLISVIVTMVSQLLPSYIS
YEAFLSYFGIGLPISVPSLGRLISNYSSNLTTNAYLFWIPLTVLVLVSLPLYIIGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=409117 GP482_RS04625 WP_158914123.1 943199..944125(-) (amiD) [Streptococcus ruminicola strain CNU_77-61]
GTGGAAAAAATTGATAAGAAACAATTTGAATTTGTTGGTTTAGATAGTTCGGCTTCAGAAATTATCGACGCTCCAACTTA
TTCTTATTGGAAATCTGTTTTTAAACAATTTTTCTCTAAAAAATCTACTTTCTTTATGCTAGCAATATTGATTGCAATCA
TTTTTATGAGTTTTGTCTATCCATTCTTTGTTCATTGTAATTTTAATGATGTCAGTAATATTAATGACTTTTCGAAACGT
TATATTTGGCCGAATAGTCAGTATTGGTTTGGTACGGACAAAGATGGTAGATCTTTATTTGATTGTGTATGGTACGGTGC
TAGAAATTCTATTTTAATTTCTGTTTTAGCAACAGTTATTAATATAATTTTAGGGGTTGTTATTGGTGGCATATGGGGTG
TCTCAAAAACAGTTGATACCATTATGATTGAGGTATATAACGTTGTCTCAAATATTCCTCAGTTGTTAATTATTATGGTC
TTAACCTATTCTTTGGGTGCAGGTTTTTGGAATATGATACTTGCATTCTGTATTACAGGATGGATTGGAATTGCTTATTC
GATTCGTGTCCAAATCTTACGTTATCGTGATTTAGAATACAATCTTGCTAGTCAAATTTTAGGAACATCAAAATTTAGAA
TTGTTGTTAAGAATTTATTGCCACAACTGATTTCGGTAATTGTGACTATGGTATCTCAGTTATTACCATCCTACATTTCA
TATGAAGCCTTTCTTTCTTATTTTGGTATTGGGCTTCCAATTTCAGTTCCAAGTCTAGGGCGCTTGATTTCAAATTATTC
CTCTAATTTAACGACTAATGCTTACTTATTTTGGATTCCTTTGACGGTTTTGGTATTGGTATCTTTGCCGTTATATATCA
TTGGGCAAAATCTTGCTGATGCAAGTGATCCAAGGACGCATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

71.104

100

0.711
  amiD Streptococcus thermophilus LMG 18311

70.13

100

0.701
  amiD Streptococcus thermophilus LMD-9

70.13

100

0.701

Multiple sequence alignment