Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   GP482_RS04615 Genome accession   NZ_CP046875
Coordinates   941201..942127 (-) Length   308 a.a.
NCBI ID   WP_039696677.1    Uniprot ID   A0A091BU96
Organism   Streptococcus ruminicola strain CNU_77-61     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 936201..947127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GP482_RS04595 (GP482_04595) - 936940..938151 (-) 1212 WP_158914117.1 ABC transporter ATP-binding protein -
  GP482_RS04600 (GP482_04600) - 938151..938957 (-) 807 WP_158914119.1 ABC transporter permease -
  GP482_RS04605 (GP482_04605) - 938958..939890 (-) 933 WP_158914121.1 glycosyltransferase family 2 protein -
  GP482_RS04610 (GP482_04610) - 939880..941034 (-) 1155 WP_074560552.1 DUF1972 domain-containing protein -
  GP482_RS04615 (GP482_04615) amiF 941201..942127 (-) 927 WP_039696677.1 ATP-binding cassette domain-containing protein Regulator
  GP482_RS04620 (GP482_04620) amiE 942120..943190 (-) 1071 WP_039696676.1 ABC transporter ATP-binding protein Regulator
  GP482_RS04625 (GP482_04625) amiD 943199..944125 (-) 927 WP_158914123.1 oligopeptide ABC transporter permease OppC Regulator
  GP482_RS04630 (GP482_04630) amiC 944125..945627 (-) 1503 WP_074799225.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 35239.42 Da        Isoelectric Point: 6.2474

>NTDB_id=409115 GP482_RS04615 WP_039696677.1 941201..942127(-) (amiF) [Streptococcus ruminicola strain CNU_77-61]
MPEKLVDIRNLEISFGEGSKKFTAVKNANFFINKGETFSLVGESGSGKTTIARAIVGLNETSAGEIIFEGKRINTRLSKA
EKGNLIQKIQMIFQDPAASLNERATVDYIISEGLYNFKLYKDEEERRQKVREIIEKVGLLPEHLTRYPHEFSGGQRQRIG
IARTLVMNPEFIIADEPISALDVSVRAQVLNLLKEIQRENGMTYLFIAHDLSVVRFISDRIAVIHQGVIVEIAETEELFH
HPIHPYTKSLLSAVPIPDPILERQKELVVYDPNQHDYTVDKPQMFEIKPNHFIWANQEEIKKYQQELL

Nucleotide


Download         Length: 927 bp        

>NTDB_id=409115 GP482_RS04615 WP_039696677.1 941201..942127(-) (amiF) [Streptococcus ruminicola strain CNU_77-61]
ATGCCTGAAAAATTAGTAGATATTCGAAATTTAGAAATCTCATTTGGTGAGGGAAGTAAGAAATTTACTGCTGTAAAAAA
TGCGAATTTCTTTATCAACAAAGGAGAGACGTTCTCGCTTGTCGGAGAATCAGGAAGTGGAAAAACAACGATTGCACGAG
CAATAGTAGGTCTTAATGAGACAAGTGCTGGAGAAATTATTTTTGAAGGTAAGAGAATCAATACGAGATTGAGTAAGGCT
GAAAAAGGAAATCTTATTCAAAAGATTCAGATGATATTTCAGGATCCAGCAGCCAGTTTAAATGAGCGAGCAACAGTAGA
TTATATCATTTCTGAAGGTCTATATAATTTTAAATTATACAAAGACGAAGAAGAACGTAGACAAAAAGTTAGAGAAATTA
TTGAAAAGGTAGGTTTGTTACCAGAACATTTAACACGATATCCTCATGAATTTTCAGGTGGACAACGACAACGTATTGGA
ATTGCAAGAACGCTTGTAATGAATCCAGAATTTATTATAGCTGATGAACCAATTTCAGCTTTGGATGTTTCAGTTAGAGC
ACAGGTACTTAATTTGTTGAAAGAGATTCAAAGAGAAAATGGTATGACATACTTGTTTATCGCGCACGACCTGTCAGTTG
TACGTTTCATTTCAGATCGTATTGCAGTTATTCATCAAGGGGTGATTGTTGAGATTGCTGAAACTGAGGAGTTATTTCAC
CATCCTATTCATCCTTATACTAAATCTCTGTTGTCTGCAGTTCCAATTCCAGATCCAATCTTAGAACGCCAAAAAGAATT
GGTTGTCTATGATCCGAATCAACATGATTATACAGTTGACAAGCCTCAGATGTTTGAAATAAAACCCAATCATTTTATTT
GGGCTAATCAAGAAGAAATTAAAAAGTATCAACAAGAGTTATTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A091BU96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

79.085

99.351

0.786
  amiF Streptococcus thermophilus LMG 18311

78.758

99.351

0.782
  amiF Streptococcus salivarius strain HSISS4

78.105

99.351

0.776

Multiple sequence alignment