Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   GPY12_RS10275 Genome accession   NZ_CP046846
Coordinates   2259315..2259626 (-) Length   103 a.a.
NCBI ID   WP_001159859.1    Uniprot ID   -
Organism   Vibrio mimicus strain F9458     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2254315..2264626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY12_RS10250 lapB 2254544..2255713 (-) 1170 WP_000889968.1 lipopolysaccharide assembly protein LapB -
  GPY12_RS10255 - 2255726..2256007 (-) 282 WP_000691486.1 LapA family protein -
  GPY12_RS10260 ihfB 2256152..2256430 (-) 279 WP_000167340.1 integration host factor subunit beta -
  GPY12_RS10265 rpsA 2256683..2258353 (-) 1671 WP_000140311.1 30S ribosomal protein S1 -
  GPY12_RS10270 cmk 2258462..2259139 (-) 678 WP_148546228.1 (d)CMP kinase -
  GPY12_RS10275 comEA 2259315..2259626 (-) 312 WP_001159859.1 helix-hairpin-helix domain-containing protein Machinery gene
  GPY12_RS10280 ppiD 2259762..2261621 (-) 1860 WP_148546226.1 peptidylprolyl isomerase -
  GPY12_RS10285 - 2261774..2262046 (-) 273 WP_001044516.1 HU family DNA-binding protein -
  GPY12_RS10290 lon 2262222..2264591 (-) 2370 WP_001047616.1 endopeptidase La -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11045.88 Da        Isoelectric Point: 4.4982

>NTDB_id=408829 GPY12_RS10275 WP_001159859.1 2259315..2259626(-) (comEA) [Vibrio mimicus strain F9458]
MQFKTTLMTVLLSLCLPAMPMLVTAEETNPTAQTEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFISI
DDLTNVKGIGEATVRNNATRILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=408829 GPY12_RS10275 WP_001159859.1 2259315..2259626(-) (comEA) [Vibrio mimicus strain F9458]
ATGCAATTCAAAACAACACTTATGACAGTTCTGCTTTCACTCTGTTTACCAGCCATGCCTATGCTGGTTACTGCTGAGGA
AACAAACCCGACAGCGCAAACTGAAGAAGGTATAGTCATTACTGTGAATATCAATACGGCTTCGGCAGAAGAGCTTGCCA
CTTTGCTAAAAGGTATCGGGCTTAAAAAAGCACAGGCGATTGTCGACTATCGTGAGGCTAATGGTCCCTTTATCAGCATC
GACGATCTGACGAATGTCAAAGGCATTGGTGAAGCAACCGTACGCAACAACGCGACTCGCATATTGCTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

83.495

100

0.835
  comEA Vibrio cholerae strain A1552

83.495

100

0.835
  comEA Vibrio parahaemolyticus RIMD 2210633

62.5

93.204

0.583
  comEA Vibrio campbellii strain DS40M4

58.763

94.175

0.553
  comE1/comEA Haemophilus influenzae Rd KW20

39.286

100

0.427
  comEA/comE1 Glaesserella parasuis strain SC1401

41.121

100

0.427

Multiple sequence alignment