Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | GPY13_RS12185 | Genome accession | NZ_CP046823 |
| Coordinates | 2660727..2661953 (+) | Length | 408 a.a. |
| NCBI ID | WP_000648444.1 | Uniprot ID | A0A2J9UYN1 |
| Organism | Vibrio mimicus strain 06-2455 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2655727..2666953
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY13_RS12160 | fldB | 2656128..2656646 (+) | 519 | WP_000690114.1 | flavodoxin FldB | - |
| GPY13_RS12165 | ampD | 2656704..2657252 (-) | 549 | WP_000564658.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GPY13_RS12170 | nadC | 2657418..2658308 (+) | 891 | WP_032470672.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GPY13_RS12175 | - | 2658553..2658990 (+) | 438 | WP_000649324.1 | type IV pilin protein | - |
| GPY13_RS12180 | pilB | 2659000..2660688 (+) | 1689 | WP_000957197.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GPY13_RS12185 | pilC | 2660727..2661953 (+) | 1227 | WP_000648444.1 | type II secretion system F family protein | Machinery gene |
| GPY13_RS12190 | pilD | 2662016..2662891 (+) | 876 | WP_000418513.1 | A24 family peptidase | Machinery gene |
| GPY13_RS12195 | coaE | 2662888..2663496 (+) | 609 | WP_000011562.1 | dephospho-CoA kinase | - |
| GPY13_RS12200 | zapD | 2663528..2664268 (+) | 741 | WP_000207199.1 | cell division protein ZapD | - |
| GPY13_RS12205 | yacG | 2664519..2664716 (+) | 198 | WP_000162865.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 408 a.a. Molecular weight: 45146.42 Da Isoelectric Point: 10.3424
>NTDB_id=408462 GPY13_RS12185 WP_000648444.1 2660727..2661953(+) (pilC) [Vibrio mimicus strain 06-2455]
MKATQNVALKNYRWKGINSNGKKVSGQMLALTELEVRDKLKEQHIQIKKIKKGSVSVFARITHRVKGKDITILTRQLATM
LTTGVPIVQALKLVGDSHRKAEMKSILAQITKSVEAGTPLSKAMRTASSHFDTLYVDLVETGEMSGNLPEVFERLATYRE
KSEQLRAKVIKALIYPSMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFAAIVAMVFG
LKALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAA
GMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG
MKATQNVALKNYRWKGINSNGKKVSGQMLALTELEVRDKLKEQHIQIKKIKKGSVSVFARITHRVKGKDITILTRQLATM
LTTGVPIVQALKLVGDSHRKAEMKSILAQITKSVEAGTPLSKAMRTASSHFDTLYVDLVETGEMSGNLPEVFERLATYRE
KSEQLRAKVIKALIYPSMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFAAIVAMVFG
LKALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAA
GMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG
Nucleotide
Download Length: 1227 bp
>NTDB_id=408462 GPY13_RS12185 WP_000648444.1 2660727..2661953(+) (pilC) [Vibrio mimicus strain 06-2455]
ATGAAAGCGACCCAAAATGTAGCCTTGAAAAACTATCGCTGGAAAGGTATCAACAGCAACGGAAAAAAAGTCTCCGGACA
GATGTTGGCGCTAACCGAATTAGAGGTGCGCGACAAACTAAAAGAGCAGCACATTCAAATCAAAAAAATCAAAAAAGGCA
GTGTTTCCGTGTTTGCGCGTATTACTCATCGCGTCAAAGGCAAAGACATCACCATTCTCACTCGACAATTGGCCACCATG
CTCACTACTGGTGTACCCATAGTGCAAGCGCTCAAACTGGTGGGAGATAGTCATAGAAAGGCCGAGATGAAATCGATCTT
GGCACAAATCACCAAAAGCGTTGAAGCAGGCACACCACTTTCAAAAGCCATGCGCACTGCGAGCAGCCATTTCGATACCT
TGTATGTCGATCTGGTGGAAACGGGAGAAATGTCCGGCAATCTGCCCGAAGTATTTGAACGCTTGGCTACTTATCGTGAG
AAAAGTGAACAACTTCGCGCCAAGGTGATCAAAGCATTGATCTACCCAAGCATGGTGGTACTGGTGGCTTTAGGGGTTTC
TTACCTGATGCTCACCATGGTTATCCCTGAATTTGAATCCATGTTTAAAGGCTTTGGAGCGGAGCTTCCTTGGTTTACTC
AACAAGTGTTAAAACTCTCGCACTGGGTTCAGGCTTACAGCCTATGGGCATTTGCGGCCATCGTAGCCATGGTATTTGGA
CTAAAAGCACTGCGTAAGAATTCCTTTCAAATTCGATTAAAAACCAGTCGGTTAGGGCTGAAATTTCCAATTATCGGCAA
TGTGCTGGCTAAGGCATCGATCGCCAAATTCAGCCGAACTCTCGCCACCAGCTTTGCAGCGGGTATTCCGATCCTAGCCA
GTTTAAAAACTACCGCCAAAACCTCTGGCAATGTGCATTTTGAAACTGCAATCAACGAAGTATACCGAGATACTGCCGCG
GGTATGCCCATGTATATTGCGATGCGCAATACCGAAGCCTTTCCCGAGATGGTGCTACAAATGGTGATGATAGGTGAAGA
ATCAGGCCAACTGGATGACATGCTCAACAAGGTCGCCACCATCTACGAATTTGAAGTCGATAACACAGTCGATAACTTAG
GTAAAATCCTTGAACCCTTGATTATCGTATTTCTTGGTACTGTTGTGGGTGGCTTGGTCGTGGCTATGTATCTGCCTATC
TTTAACTTAATGAGTGTATTGGGTTAG
ATGAAAGCGACCCAAAATGTAGCCTTGAAAAACTATCGCTGGAAAGGTATCAACAGCAACGGAAAAAAAGTCTCCGGACA
GATGTTGGCGCTAACCGAATTAGAGGTGCGCGACAAACTAAAAGAGCAGCACATTCAAATCAAAAAAATCAAAAAAGGCA
GTGTTTCCGTGTTTGCGCGTATTACTCATCGCGTCAAAGGCAAAGACATCACCATTCTCACTCGACAATTGGCCACCATG
CTCACTACTGGTGTACCCATAGTGCAAGCGCTCAAACTGGTGGGAGATAGTCATAGAAAGGCCGAGATGAAATCGATCTT
GGCACAAATCACCAAAAGCGTTGAAGCAGGCACACCACTTTCAAAAGCCATGCGCACTGCGAGCAGCCATTTCGATACCT
TGTATGTCGATCTGGTGGAAACGGGAGAAATGTCCGGCAATCTGCCCGAAGTATTTGAACGCTTGGCTACTTATCGTGAG
AAAAGTGAACAACTTCGCGCCAAGGTGATCAAAGCATTGATCTACCCAAGCATGGTGGTACTGGTGGCTTTAGGGGTTTC
TTACCTGATGCTCACCATGGTTATCCCTGAATTTGAATCCATGTTTAAAGGCTTTGGAGCGGAGCTTCCTTGGTTTACTC
AACAAGTGTTAAAACTCTCGCACTGGGTTCAGGCTTACAGCCTATGGGCATTTGCGGCCATCGTAGCCATGGTATTTGGA
CTAAAAGCACTGCGTAAGAATTCCTTTCAAATTCGATTAAAAACCAGTCGGTTAGGGCTGAAATTTCCAATTATCGGCAA
TGTGCTGGCTAAGGCATCGATCGCCAAATTCAGCCGAACTCTCGCCACCAGCTTTGCAGCGGGTATTCCGATCCTAGCCA
GTTTAAAAACTACCGCCAAAACCTCTGGCAATGTGCATTTTGAAACTGCAATCAACGAAGTATACCGAGATACTGCCGCG
GGTATGCCCATGTATATTGCGATGCGCAATACCGAAGCCTTTCCCGAGATGGTGCTACAAATGGTGATGATAGGTGAAGA
ATCAGGCCAACTGGATGACATGCTCAACAAGGTCGCCACCATCTACGAATTTGAAGTCGATAACACAGTCGATAACTTAG
GTAAAATCCTTGAACCCTTGATTATCGTATTTCTTGGTACTGTTGTGGGTGGCTTGGTCGTGGCTATGTATCTGCCTATC
TTTAACTTAATGAGTGTATTGGGTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Vibrio cholerae strain A1552 |
95.588 |
100 |
0.956 |
| pilC | Vibrio campbellii strain DS40M4 |
74 |
98.039 |
0.725 |
| pilC | Pseudomonas stutzeri DSM 10701 |
42.289 |
98.529 |
0.417 |
| pilC | Acinetobacter baumannii D1279779 |
42 |
98.039 |
0.412 |
| pilC | Acinetobacter baylyi ADP1 |
41.176 |
100 |
0.412 |
| pilC | Legionella pneumophila strain ERS1305867 |
42.065 |
97.304 |
0.409 |
| pilG | Neisseria gonorrhoeae MS11 |
41.103 |
97.794 |
0.402 |
| pilG | Neisseria meningitidis 44/76-A |
40.602 |
97.794 |
0.397 |