Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | GPX85_RS15885 | Genome accession | NZ_CP046822 |
| Coordinates | 2642035..2643261 (+) | Length | 408 a.a. |
| NCBI ID | WP_154170154.1 | Uniprot ID | - |
| Organism | Vibrio metschnikovii strain 07-2421 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2637035..2648261
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPX85_RS15860 | fldB | 2637494..2638012 (+) | 519 | WP_154170164.1 | flavodoxin FldB | - |
| GPX85_RS15865 | ampD | 2638009..2638554 (-) | 546 | WP_154170162.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GPX85_RS15870 | nadC | 2638663..2639553 (+) | 891 | WP_158138881.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GPX85_RS15875 | - | 2639837..2640289 (+) | 453 | WP_158138882.1 | pilin | - |
| GPX85_RS15880 | pilB | 2640328..2642016 (+) | 1689 | WP_158138883.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GPX85_RS15885 | pilC | 2642035..2643261 (+) | 1227 | WP_154170154.1 | type II secretion system F family protein | Machinery gene |
| GPX85_RS15890 | pilD | 2643437..2644303 (+) | 867 | WP_158138884.1 | prepilin peptidase | Machinery gene |
| GPX85_RS15895 | coaE | 2644309..2644917 (+) | 609 | WP_158138885.1 | dephospho-CoA kinase | - |
| GPX85_RS15900 | zapD | 2644949..2645689 (+) | 741 | WP_004394266.1 | cell division protein ZapD | - |
| GPX85_RS15905 | yacG | 2645731..2645928 (+) | 198 | WP_158138886.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 408 a.a. Molecular weight: 45061.50 Da Isoelectric Point: 10.2098
>NTDB_id=408424 GPX85_RS15885 WP_154170154.1 2642035..2643261(+) (pilC) [Vibrio metschnikovii strain 07-2421]
MTLSKAQELKNYRWKGINSSGKKVSGQFLAISELEVRDKLKDQHVQIQKIKKSSLSLITRLTHRATNKEITLLTRQLSTM
LATGVPIVQALKLVADSHQKAEMKSIITQISKGVAAGTPISKAMRTASSLFDPLYVDLVQTGEQSGNLAEVFERLATYRE
KTEQLRAKVIKALIYPAMVMLVALGVSYLMLTMIIPEFELMFQGFGAELPWFTQQVLKLSHLVQAYSLVFVLLCIAIVFG
FKLIRKKSFQFRLKTSRLALTIPIVGGILCKASIAKFSRTLATSFAAGIPILDSLKTTAKTAGNLHFETAIQQVYRDTAA
GMPMYIAMRNTGAFPELVLQMVMIGEESGKLDDMLNKVATIYEFDVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG
MTLSKAQELKNYRWKGINSSGKKVSGQFLAISELEVRDKLKDQHVQIQKIKKSSLSLITRLTHRATNKEITLLTRQLSTM
LATGVPIVQALKLVADSHQKAEMKSIITQISKGVAAGTPISKAMRTASSLFDPLYVDLVQTGEQSGNLAEVFERLATYRE
KTEQLRAKVIKALIYPAMVMLVALGVSYLMLTMIIPEFELMFQGFGAELPWFTQQVLKLSHLVQAYSLVFVLLCIAIVFG
FKLIRKKSFQFRLKTSRLALTIPIVGGILCKASIAKFSRTLATSFAAGIPILDSLKTTAKTAGNLHFETAIQQVYRDTAA
GMPMYIAMRNTGAFPELVLQMVMIGEESGKLDDMLNKVATIYEFDVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG
Nucleotide
Download Length: 1227 bp
>NTDB_id=408424 GPX85_RS15885 WP_154170154.1 2642035..2643261(+) (pilC) [Vibrio metschnikovii strain 07-2421]
ATGACGCTATCTAAAGCACAAGAACTGAAAAATTATCGCTGGAAAGGCATCAATAGCTCTGGCAAAAAAGTGTCAGGGCA
ATTTTTAGCGATCAGCGAATTGGAAGTGCGCGATAAACTCAAAGATCAACATGTGCAAATTCAAAAGATCAAAAAAAGCA
GCCTCTCTTTGATCACTCGTCTCACTCATCGCGCCACAAACAAAGAGATTACCCTGCTGACTCGCCAACTCTCGACCATG
CTCGCGACGGGGGTCCCCATTGTTCAAGCCTTAAAGTTAGTCGCTGATAGTCATCAAAAAGCAGAAATGAAATCGATCAT
CACTCAAATAAGTAAAGGCGTAGCAGCAGGGACGCCGATCTCAAAAGCAATGCGTACCGCCAGTAGCCTGTTTGACCCTC
TTTACGTTGATTTGGTACAAACGGGTGAACAATCGGGTAACTTGGCGGAAGTTTTTGAGCGCCTTGCCACCTATCGAGAG
AAAACCGAACAACTGCGCGCCAAAGTGATCAAAGCGTTAATCTATCCAGCGATGGTGATGTTGGTTGCGCTTGGCGTCTC
TTACTTAATGCTCACCATGATTATTCCTGAATTTGAGCTTATGTTTCAAGGTTTTGGTGCCGAGTTACCTTGGTTTACTC
AACAAGTACTTAAACTGTCGCATCTGGTTCAAGCCTACAGCTTAGTCTTTGTACTGCTCTGCATTGCCATCGTATTCGGT
TTTAAACTTATCCGTAAAAAATCGTTCCAATTCCGTTTAAAAACCAGCCGCTTAGCACTCACTATACCGATTGTTGGTGG
CATACTCTGCAAAGCGTCGATCGCCAAATTTAGCCGAACCCTCGCCACCAGCTTTGCGGCTGGGATCCCGATTCTTGATA
GCCTAAAAACGACCGCGAAAACCGCAGGTAATCTTCATTTTGAAACGGCTATTCAACAAGTCTACCGAGATACTGCGGCA
GGCATGCCAATGTATATCGCAATGCGCAATACCGGCGCTTTCCCAGAATTGGTTCTACAAATGGTTATGATTGGCGAGGA
GTCTGGTAAGCTCGATGACATGCTGAATAAAGTAGCAACGATTTATGAATTCGACGTTGATAACACCGTAGATAATTTAG
GTAAAATCCTCGAGCCCCTAATTATTGTCTTTCTTGGTACAGTGGTTGGTGGACTGGTCGTGGCAATGTATTTACCTATC
TTTAACTTAATGAGTGTATTGGGGTAG
ATGACGCTATCTAAAGCACAAGAACTGAAAAATTATCGCTGGAAAGGCATCAATAGCTCTGGCAAAAAAGTGTCAGGGCA
ATTTTTAGCGATCAGCGAATTGGAAGTGCGCGATAAACTCAAAGATCAACATGTGCAAATTCAAAAGATCAAAAAAAGCA
GCCTCTCTTTGATCACTCGTCTCACTCATCGCGCCACAAACAAAGAGATTACCCTGCTGACTCGCCAACTCTCGACCATG
CTCGCGACGGGGGTCCCCATTGTTCAAGCCTTAAAGTTAGTCGCTGATAGTCATCAAAAAGCAGAAATGAAATCGATCAT
CACTCAAATAAGTAAAGGCGTAGCAGCAGGGACGCCGATCTCAAAAGCAATGCGTACCGCCAGTAGCCTGTTTGACCCTC
TTTACGTTGATTTGGTACAAACGGGTGAACAATCGGGTAACTTGGCGGAAGTTTTTGAGCGCCTTGCCACCTATCGAGAG
AAAACCGAACAACTGCGCGCCAAAGTGATCAAAGCGTTAATCTATCCAGCGATGGTGATGTTGGTTGCGCTTGGCGTCTC
TTACTTAATGCTCACCATGATTATTCCTGAATTTGAGCTTATGTTTCAAGGTTTTGGTGCCGAGTTACCTTGGTTTACTC
AACAAGTACTTAAACTGTCGCATCTGGTTCAAGCCTACAGCTTAGTCTTTGTACTGCTCTGCATTGCCATCGTATTCGGT
TTTAAACTTATCCGTAAAAAATCGTTCCAATTCCGTTTAAAAACCAGCCGCTTAGCACTCACTATACCGATTGTTGGTGG
CATACTCTGCAAAGCGTCGATCGCCAAATTTAGCCGAACCCTCGCCACCAGCTTTGCGGCTGGGATCCCGATTCTTGATA
GCCTAAAAACGACCGCGAAAACCGCAGGTAATCTTCATTTTGAAACGGCTATTCAACAAGTCTACCGAGATACTGCGGCA
GGCATGCCAATGTATATCGCAATGCGCAATACCGGCGCTTTCCCAGAATTGGTTCTACAAATGGTTATGATTGGCGAGGA
GTCTGGTAAGCTCGATGACATGCTGAATAAAGTAGCAACGATTTATGAATTCGACGTTGATAACACCGTAGATAATTTAG
GTAAAATCCTCGAGCCCCTAATTATTGTCTTTCTTGGTACAGTGGTTGGTGGACTGGTCGTGGCAATGTATTTACCTATC
TTTAACTTAATGAGTGTATTGGGGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Vibrio cholerae strain A1552 |
81.373 |
100 |
0.814 |
| pilC | Vibrio campbellii strain DS40M4 |
69.975 |
98.775 |
0.691 |
| pilC | Pseudomonas stutzeri DSM 10701 |
41.687 |
98.775 |
0.412 |
| pilC | Acinetobacter baumannii D1279779 |
40.686 |
100 |
0.407 |
| pilG | Neisseria gonorrhoeae MS11 |
40.541 |
99.755 |
0.404 |
| pilC | Acinetobacter baylyi ADP1 |
39.951 |
100 |
0.4 |
| pilG | Neisseria meningitidis 44/76-A |
40.049 |
99.755 |
0.4 |
| pilC | Legionella pneumophila strain ERS1305867 |
40.351 |
97.794 |
0.395 |