Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | GPX86_RS10485 | Genome accession | NZ_CP046793 |
| Coordinates | 2327243..2328469 (-) | Length | 408 a.a. |
| NCBI ID | WP_154170154.1 | Uniprot ID | - |
| Organism | Vibrio metschnikovii strain 9502-00 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2322243..2333469
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPX86_RS10465 | yacG | 2324576..2324773 (-) | 198 | WP_158138886.1 | DNA gyrase inhibitor YacG | - |
| GPX86_RS10470 | zapD | 2324815..2325555 (-) | 741 | WP_004394266.1 | cell division protein ZapD | - |
| GPX86_RS10475 | coaE | 2325587..2326195 (-) | 609 | WP_158138885.1 | dephospho-CoA kinase | - |
| GPX86_RS10480 | pilD | 2326201..2327067 (-) | 867 | WP_158144688.1 | A24 family peptidase | Machinery gene |
| GPX86_RS10485 | pilC | 2327243..2328469 (-) | 1227 | WP_154170154.1 | type II secretion system F family protein | Machinery gene |
| GPX86_RS10490 | pilB | 2328488..2330176 (-) | 1689 | WP_158144689.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GPX86_RS10495 | - | 2330191..2330610 (-) | 420 | WP_158144690.1 | pilin | - |
| GPX86_RS10500 | nadC | 2330893..2331783 (-) | 891 | WP_158144691.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GPX86_RS10505 | ampD | 2331892..2332437 (+) | 546 | WP_154170162.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GPX86_RS10510 | fldB | 2332434..2332952 (-) | 519 | WP_154170164.1 | flavodoxin FldB | - |
Sequence
Protein
Download Length: 408 a.a. Molecular weight: 45061.50 Da Isoelectric Point: 10.2098
>NTDB_id=407884 GPX86_RS10485 WP_154170154.1 2327243..2328469(-) (pilC) [Vibrio metschnikovii strain 9502-00]
MTLSKAQELKNYRWKGINSSGKKVSGQFLAISELEVRDKLKDQHVQIQKIKKSSLSLITRLTHRATNKEITLLTRQLSTM
LATGVPIVQALKLVADSHQKAEMKSIITQISKGVAAGTPISKAMRTASSLFDPLYVDLVQTGEQSGNLAEVFERLATYRE
KTEQLRAKVIKALIYPAMVMLVALGVSYLMLTMIIPEFELMFQGFGAELPWFTQQVLKLSHLVQAYSLVFVLLCIAIVFG
FKLIRKKSFQFRLKTSRLALTIPIVGGILCKASIAKFSRTLATSFAAGIPILDSLKTTAKTAGNLHFETAIQQVYRDTAA
GMPMYIAMRNTGAFPELVLQMVMIGEESGKLDDMLNKVATIYEFDVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG
MTLSKAQELKNYRWKGINSSGKKVSGQFLAISELEVRDKLKDQHVQIQKIKKSSLSLITRLTHRATNKEITLLTRQLSTM
LATGVPIVQALKLVADSHQKAEMKSIITQISKGVAAGTPISKAMRTASSLFDPLYVDLVQTGEQSGNLAEVFERLATYRE
KTEQLRAKVIKALIYPAMVMLVALGVSYLMLTMIIPEFELMFQGFGAELPWFTQQVLKLSHLVQAYSLVFVLLCIAIVFG
FKLIRKKSFQFRLKTSRLALTIPIVGGILCKASIAKFSRTLATSFAAGIPILDSLKTTAKTAGNLHFETAIQQVYRDTAA
GMPMYIAMRNTGAFPELVLQMVMIGEESGKLDDMLNKVATIYEFDVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG
Nucleotide
Download Length: 1227 bp
>NTDB_id=407884 GPX86_RS10485 WP_154170154.1 2327243..2328469(-) (pilC) [Vibrio metschnikovii strain 9502-00]
ATGACGCTATCTAAAGCACAAGAACTGAAAAATTATCGCTGGAAAGGCATCAATAGCTCTGGCAAAAAAGTGTCAGGGCA
ATTTTTAGCGATCAGCGAATTGGAAGTGCGCGATAAACTCAAAGATCAACATGTGCAAATTCAAAAGATCAAAAAAAGCA
GCCTCTCTTTGATCACTCGTCTCACTCATCGCGCCACAAACAAAGAGATTACCCTGCTGACTCGCCAACTCTCGACCATG
CTCGCGACGGGGGTACCCATTGTTCAAGCCTTAAAGTTAGTCGCTGATAGTCATCAAAAAGCAGAAATGAAATCGATCAT
CACTCAAATAAGTAAAGGCGTAGCAGCAGGGACGCCGATCTCAAAAGCAATGCGTACCGCCAGTAGCCTGTTTGACCCTC
TTTACGTTGATTTGGTACAAACGGGTGAACAATCGGGTAACTTGGCGGAAGTTTTTGAGCGCCTTGCCACCTATCGAGAG
AAAACCGAACAACTGCGCGCCAAAGTGATCAAAGCGTTAATCTATCCAGCGATGGTGATGTTGGTTGCGCTTGGCGTCTC
TTACTTAATGCTCACCATGATTATTCCTGAATTTGAGCTTATGTTTCAAGGTTTTGGTGCCGAGTTACCTTGGTTTACTC
AACAAGTACTTAAACTGTCGCATCTGGTTCAAGCCTACAGCTTAGTCTTTGTACTGCTCTGCATTGCCATCGTATTCGGT
TTTAAACTTATCCGAAAAAAATCGTTCCAATTCCGTTTAAAAACCAGCCGCTTAGCACTCACTATACCCATTGTTGGTGG
CATACTCTGCAAAGCGTCGATCGCCAAATTTAGCCGAACCCTCGCCACCAGCTTTGCGGCTGGGATCCCGATTCTTGATA
GCCTAAAAACGACCGCGAAAACCGCAGGTAATCTTCATTTTGAAACGGCTATTCAACAAGTCTACCGAGATACTGCGGCA
GGCATGCCAATGTATATCGCGATGCGCAATACCGGCGCTTTCCCAGAATTGGTTCTACAAATGGTTATGATTGGTGAGGA
GTCTGGTAAGCTCGATGATATGCTGAATAAAGTAGCAACGATTTATGAATTCGACGTTGATAACACCGTAGATAATTTAG
GTAAAATCCTTGAACCGTTAATTATTGTCTTTCTTGGCACAGTGGTTGGTGGGCTGGTTGTGGCAATGTATTTACCTATC
TTTAACTTAATGAGTGTATTGGGGTAG
ATGACGCTATCTAAAGCACAAGAACTGAAAAATTATCGCTGGAAAGGCATCAATAGCTCTGGCAAAAAAGTGTCAGGGCA
ATTTTTAGCGATCAGCGAATTGGAAGTGCGCGATAAACTCAAAGATCAACATGTGCAAATTCAAAAGATCAAAAAAAGCA
GCCTCTCTTTGATCACTCGTCTCACTCATCGCGCCACAAACAAAGAGATTACCCTGCTGACTCGCCAACTCTCGACCATG
CTCGCGACGGGGGTACCCATTGTTCAAGCCTTAAAGTTAGTCGCTGATAGTCATCAAAAAGCAGAAATGAAATCGATCAT
CACTCAAATAAGTAAAGGCGTAGCAGCAGGGACGCCGATCTCAAAAGCAATGCGTACCGCCAGTAGCCTGTTTGACCCTC
TTTACGTTGATTTGGTACAAACGGGTGAACAATCGGGTAACTTGGCGGAAGTTTTTGAGCGCCTTGCCACCTATCGAGAG
AAAACCGAACAACTGCGCGCCAAAGTGATCAAAGCGTTAATCTATCCAGCGATGGTGATGTTGGTTGCGCTTGGCGTCTC
TTACTTAATGCTCACCATGATTATTCCTGAATTTGAGCTTATGTTTCAAGGTTTTGGTGCCGAGTTACCTTGGTTTACTC
AACAAGTACTTAAACTGTCGCATCTGGTTCAAGCCTACAGCTTAGTCTTTGTACTGCTCTGCATTGCCATCGTATTCGGT
TTTAAACTTATCCGAAAAAAATCGTTCCAATTCCGTTTAAAAACCAGCCGCTTAGCACTCACTATACCCATTGTTGGTGG
CATACTCTGCAAAGCGTCGATCGCCAAATTTAGCCGAACCCTCGCCACCAGCTTTGCGGCTGGGATCCCGATTCTTGATA
GCCTAAAAACGACCGCGAAAACCGCAGGTAATCTTCATTTTGAAACGGCTATTCAACAAGTCTACCGAGATACTGCGGCA
GGCATGCCAATGTATATCGCGATGCGCAATACCGGCGCTTTCCCAGAATTGGTTCTACAAATGGTTATGATTGGTGAGGA
GTCTGGTAAGCTCGATGATATGCTGAATAAAGTAGCAACGATTTATGAATTCGACGTTGATAACACCGTAGATAATTTAG
GTAAAATCCTTGAACCGTTAATTATTGTCTTTCTTGGCACAGTGGTTGGTGGGCTGGTTGTGGCAATGTATTTACCTATC
TTTAACTTAATGAGTGTATTGGGGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Vibrio cholerae strain A1552 |
81.373 |
100 |
0.814 |
| pilC | Vibrio campbellii strain DS40M4 |
69.975 |
98.775 |
0.691 |
| pilC | Pseudomonas stutzeri DSM 10701 |
41.687 |
98.775 |
0.412 |
| pilC | Acinetobacter baumannii D1279779 |
40.686 |
100 |
0.407 |
| pilG | Neisseria gonorrhoeae MS11 |
40.541 |
99.755 |
0.404 |
| pilC | Acinetobacter baylyi ADP1 |
39.951 |
100 |
0.4 |
| pilG | Neisseria meningitidis 44/76-A |
40.049 |
99.755 |
0.4 |
| pilC | Legionella pneumophila strain ERS1305867 |
40.351 |
97.794 |
0.395 |