Detailed information NTG0407036

Bioinformatically predicted

Overview

• Name: ciaR
• Type: Regulator
• Locus tag: SSU16085_RS05290
• Genome accession: NZ_CP058740
• Coordinates: 1108843..1109514 (+)
• Length: 223 a.a.
• NCBI ID: WP_024385291.1
• Uniprot ID: -
• Organism: Streptococcus suis strain 16085/3b
• Function: repress competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1103843..1114514

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSU16085_RS05260 (SSU16085_01073)	pstC	1104071..1104988 (+)	918	WP_002937619.1	phosphate ABC transporter permease subunit PstC	-
SSU16085_RS05265 (SSU16085_01074)	pstA	1104978..1105865 (+)	888	WP_002937616.1	phosphate ABC transporter permease PstA	-
SSU16085_RS05270 (SSU16085_01075)	pstB	1105890..1106693 (+)	804	WP_002937615.1	phosphate ABC transporter ATP-binding protein PstB	-
SSU16085_RS05275 (SSU16085_01076)	pstB	1106705..1107463 (+)	759	WP_002937614.1	phosphate ABC transporter ATP-binding protein PstB	-
SSU16085_RS05280 (SSU16085_01077)	phoU	1107492..1108148 (+)	657	WP_192062934.1	phosphate signaling complex protein PhoU	-
SSU16085_RS10825	-	1108314..1108649 (+)	336	Protein_1016	hypothetical protein	-
SSU16085_RS05290 (SSU16085_01079)	ciaR	1108843..1109514 (+)	672	WP_024385291.1	response regulator transcription factor	Regulator
SSU16085_RS05295 (SSU16085_01080)	ciaH	1109507..1110886 (+)	1380	WP_024394629.1	cell wall metabolism sensor histidine kinase WalK	Regulator
SSU16085_RS05300 (SSU16085_01081)	-	1111210..1112439 (+)	1230	WP_024394628.1	transglutaminase domain-containing protein	-
SSU16085_RS05305 (SSU16085_01082)	rpsT	1112701..1112949 (-)	249	WP_012027069.1	30S ribosomal protein S20	-
SSU16085_RS05310 (SSU16085_01083)	coaA	1113008..1113928 (-)	921	WP_024381359.1	type I pantothenate kinase	-

Sequence

Protein

• Length: 223 a.a.
• Molecular weight: 25231.80 Da
• Isoelectric Point: 4.2183

>NTDB_id=407036 SSU16085_RS05290 WP_024385291.1 1108843..1109514(+) (ciaR) [Streptococcus suis strain 16085/3b]
MIKILLVEDDLSLSNSVFDFLDDFADVMQVFDGEEGVYEAETGVYDLILLDLMLPEKDGFQVLKELREKGVTTPVLITTA
KESLEDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLTYGDVTVDLSTNSTTVNGEEVELLGKEFDLLVY
FLQNQNVILPKTQIFDRIWGFDSDTTISVVEVYVSKIRKKLKGTTFGENLQTLRSVGYILKNA

Nucleotide

• Length: 672 bp

>NTDB_id=407036 SSU16085_RS05290 WP_024385291.1 1108843..1109514(+) (ciaR) [Streptococcus suis strain 16085/3b]
ATGATTAAAATATTGTTAGTGGAAGATGATTTAAGTCTATCAAATTCTGTTTTCGATTTCTTAGATGATTTTGCGGATGT
TATGCAGGTTTTTGATGGTGAAGAGGGCGTTTATGAGGCGGAAACAGGCGTTTATGATTTGATTCTTTTGGATTTAATGT
TGCCTGAAAAAGATGGCTTCCAAGTTTTGAAAGAATTACGTGAAAAAGGTGTTACGACACCTGTTCTGATTACAACAGCC
AAGGAAAGTCTAGAGGATAAAGGCCATGGTTTTGAATTGGGGGCTGATGACTATTTGACGAAACCGTTTTATTTAGAAGA
ATTGAAGATGCGAATTCAAGCTCTATTAAAACGAGCGGGTAAGTTTAATGAAAACACACTAACTTATGGGGACGTGACCG
TTGACTTATCGACAAACTCTACAACTGTAAATGGCGAAGAAGTTGAATTGCTAGGAAAAGAATTCGATCTACTAGTCTAC
TTCTTGCAAAATCAAAATGTTATCTTACCAAAAACTCAAATTTTTGACCGTATTTGGGGATTTGACAGTGACACTACTAT
TTCAGTAGTAGAAGTATATGTTTCTAAAATTAGGAAAAAGTTGAAAGGAACGACCTTCGGGGAAAATCTTCAAACCCTGC
GTAGTGTCGGGTACATTCTAAAAAATGCCTAA

Domains

Predicted by InterProScan.

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (145-220)

• Response regulator receiver domain (Response_reg) (4-112)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ciaR	Streptococcus mutans UA159	90.135	100	0.901
ciaR	Streptococcus pneumoniae Rx1	88.789	100	0.888
ciaR	Streptococcus pneumoniae D39	88.789	100	0.888
ciaR	Streptococcus pneumoniae R6	88.789	100	0.888
ciaR	Streptococcus pneumoniae TIGR4	88.789	100	0.888
covR	Lactococcus lactis subsp. lactis strain DGCC12653	38.053	100	0.386
vicR	Streptococcus mutans UA159	35.47	100	0.372
covR	Streptococcus salivarius strain HSISS4	36.283	100	0.368