Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   GPY00_RS00785 Genome accession   NZ_CP046747
Coordinates   174561..175148 (-) Length   195 a.a.
NCBI ID   WP_044128132.1    Uniprot ID   -
Organism   Vibrio cholerae strain 3541-04     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 169561..180148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY00_RS00765 - 169787..171052 (-) 1266 WP_000835928.1 YdgA family protein -
  GPY00_RS00770 - 171275..173230 (+) 1956 WP_158128383.1 ATP-binding protein -
  GPY00_RS00775 - 173227..173724 (+) 498 WP_001031964.1 response regulator -
  GPY00_RS00780 - 173915..174463 (+) 549 WP_044127304.1 hypothetical protein -
  GPY00_RS00785 tfoX 174561..175148 (-) 588 WP_044128132.1 TfoX/Sxy family DNA transformation protein Regulator
  GPY00_RS00790 - 175527..176447 (+) 921 WP_044128133.1 HDOD domain-containing protein -
  GPY00_RS00795 - 176468..177373 (+) 906 WP_044128134.1 lysine exporter LysO family protein -
  GPY00_RS00800 - 177562..178071 (+) 510 WP_000826868.1 hypothetical protein -
  GPY00_RS00805 panP 178181..179827 (+) 1647 WP_158128384.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22865.07 Da        Isoelectric Point: 6.6463

>NTDB_id=407037 GPY00_RS00785 WP_044128132.1 174561..175148(-) (tfoX) [Vibrio cholerae strain 3541-04]
MNEQQFFDYVTKFGTYQKRSMFGGIGLFQHDAMYVLVSEDRIFVRGGEELDPELMALGCEKYRHVKKQTTATVNYYDITE
LYEQHHPELDSIIERSIQFSVNQREFQRSAASRRLRDLPNMQLTLERMVKKAGIDDVETFMSLGAPEVFNKVRQAYGSDV
DVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCEQR

Nucleotide


Download         Length: 588 bp        

>NTDB_id=407037 GPY00_RS00785 WP_044128132.1 174561..175148(-) (tfoX) [Vibrio cholerae strain 3541-04]
ATGAATGAGCAACAGTTTTTCGACTACGTAACTAAGTTTGGCACATACCAAAAACGCTCAATGTTTGGTGGAATAGGTCT
GTTTCAACACGACGCTATGTATGTGTTGGTCAGTGAAGACCGCATTTTTGTGCGTGGCGGTGAAGAGCTCGACCCTGAGC
TCATGGCTTTAGGGTGCGAGAAATATCGCCATGTTAAAAAACAGACAACGGCAACCGTAAACTATTACGACATCACTGAA
CTGTATGAGCAACATCACCCTGAGCTAGACTCGATCATTGAACGCTCGATTCAGTTTTCTGTGAATCAACGGGAGTTTCA
ACGTTCAGCAGCCAGTCGTCGTCTACGTGATTTACCCAATATGCAGCTGACTTTAGAGCGTATGGTGAAAAAAGCGGGCA
TTGACGATGTGGAAACTTTTATGAGCCTCGGTGCGCCAGAAGTGTTTAACAAGGTGCGTCAAGCTTATGGAAGTGATGTC
GATGTAAAACTACTGTGGAAGTTTGCAGGTGCGATTGAAGGCATTCACTGGAAACTGCTGCAAGAGCCACGTAAGCGCCA
ACTGTTAGAAAGTTGCGAGCAGCGTTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(9-99)

TfoX C-terminal domain (TfoX_C)

(112-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

98.462

100

0.985
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

98.462

100

0.985
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

98.462

100

0.985
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

98.462

100

0.985
  tfoX Vibrio cholerae strain A1552

98.462

100

0.985
  tfoX Vibrio campbellii strain DS40M4

69.948

98.974

0.692
  tfoX Vibrio parahaemolyticus RIMD 2210633

68.912

98.974

0.682
  tfoX Aliivibrio fischeri ES114

59.043

96.41

0.569

Multiple sequence alignment