Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GPA07_RS04005 Genome accession   NZ_CP046653
Coordinates   781451..782047 (-) Length   198 a.a.
NCBI ID   WP_008361979.1    Uniprot ID   -
Organism   Bacillus sp. ms-22     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 782711..784063 781451..782047 flank 664


Gene organization within MGE regions


Location: 781451..784063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA07_RS04005 (GPA07_04005) clpP 781451..782047 (-) 597 WP_008361979.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  GPA07_RS04010 (GPA07_04010) - 782275..782583 (+) 309 WP_008361976.1 TM2 domain-containing protein -
  GPA07_RS04015 (GPA07_04015) - 782711..784063 (+) 1353 WP_157292061.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21848.99 Da        Isoelectric Point: 4.6076

>NTDB_id=406411 GPA07_RS04005 WP_008361979.1 781451..782047(-) (clpP) [Bacillus sp. ms-22]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLSERTGQ
PIEVIERDTDRDNFKTAEEALEYGLIDKVLTRNTDEQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=406411 GPA07_RS04005 WP_008361979.1 781451..782047(-) (clpP) [Bacillus sp. ms-22]
ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCCTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATCATGCTTGGTTCTGCAATCGATGACAATGTTGCCAACTCCATCGTGTCACAGCTTCTTTTCTTAGAAGCCG
AAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCGATCACAGCTGGTATGGCCATTTACGATACG
ATGCAATTTATTAAACCAAAGGTATCAACTATTTGTATTGGTATGGCTGCATCAATGGGTGCGTTCCTGCTTGCTGCTGG
TGAAAAAGGTAAGCGTTATGCCCTTCCAAATAGTGAAGTGATGATTCACCAACCACTAGGCGGTGCCCAAGGTCAAGCAA
CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGAGATAAACTGAACCAAGTACTTTCTGAACGTACTGGTCAG
CCAATTGAAGTGATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCTCTTGAATACGGACTCATTGA
CAAAGTCTTGACCCGTAATACAGACGAACAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

92.893

99.495

0.924
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.539

96.465

0.652
  clpP Streptococcus thermophilus LMG 18311

58.549

97.475

0.571
  clpP Streptococcus thermophilus LMD-9

58.549

97.475

0.571
  clpP Lactococcus lactis subsp. cremoris KW2

56.186

97.98

0.551
  clpP Streptococcus pneumoniae D39

55.67

97.98

0.545
  clpP Streptococcus pneumoniae Rx1

55.67

97.98

0.545
  clpP Streptococcus pneumoniae R6

55.67

97.98

0.545
  clpP Streptococcus pneumoniae TIGR4

55.67

97.98

0.545
  clpP Streptococcus mutans UA159

55.155

97.98

0.54
  clpP Streptococcus pyogenes JRS4

54.922

97.475

0.535
  clpP Streptococcus pyogenes MGAS315

54.922

97.475

0.535
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.124

97.98

0.53

Multiple sequence alignment