Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   S9968_RS06780 Genome accession   NZ_CP058666
Coordinates   1262446..1262625 (+) Length   59 a.a.
NCBI ID   WP_017285426.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S9968     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1257446..1267625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S9968_RS06750 (S9968_101350) - 1258794..1259120 (+) 327 WP_000404431.1 DUF1366 domain-containing protein -
  S9968_RS06755 (S9968_101351) - 1259095..1259307 (+) 213 WP_000698337.1 hypothetical protein -
  S9968_RS06760 (S9968_101352) - 1259320..1259622 (+) 303 WP_000215499.1 hypothetical protein -
  S9968_RS06765 (S9968_101353) - 1259624..1259878 (+) 255 WP_000611524.1 phage holin -
  S9968_RS06770 (S9968_101355) - 1260004..1261338 (+) 1335 WP_000257233.1 GH25 family lysozyme -
  S9968_RS06775 (S9968_101356) - 1261704..1262216 (+) 513 WP_000634505.1 PBECR4 domain-containing protein -
  S9968_RS06780 (S9968_101357) prx 1262446..1262625 (+) 180 WP_017285426.1 hypothetical protein Regulator
  S9968_RS06785 (S9968_101358) - 1262725..1263306 (-) 582 WP_257151345.1 site-specific integrase -
  S9968_RS06790 (S9968_101359) - 1263342..1263608 (-) 267 WP_001872365.1 hypothetical protein -
  S9968_RS11320 - 1263614..1264991 (+) 1378 Protein_1264 IS3 family transposase -
  S9968_RS06815 - 1265164..1265325 (-) 162 WP_000508795.1 TM2 domain-containing protein -
  S9968_RS06820 (S9968_101363) - 1266067..1267344 (+) 1278 WP_000594360.1 ABC transporter permease -

Sequence

Protein


Download         Length: 59 a.a.        Molecular weight: 6955.96 Da        Isoelectric Point: 4.1191

>NTDB_id=406367 S9968_RS06780 WP_017285426.1 1262446..1262625(+) (prx) [Streptococcus agalactiae strain S9968]
MLYIDEFKEAIDKGYILGDTVAIVRKNGQIFDYVLPHEEVREEEVVTVERVEDVMIELR

Nucleotide


Download         Length: 180 bp        

>NTDB_id=406367 S9968_RS06780 WP_017285426.1 1262446..1262625(+) (prx) [Streptococcus agalactiae strain S9968]
ATGTTATATATAGATGAGTTTAAAGAAGCGATTGATAAAGGATATATTTTAGGAGACACAGTAGCGATTGTGCGCAAAAA
CGGACAGATTTTTGATTATGTGTTGCCACACGAAGAAGTGAGAGAAGAAGAGGTTGTGACAGTTGAGAGAGTGGAAGACG
TTATGATAGAATTGAGGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

75.862

98.305

0.746
  prx Streptococcus pyogenes MGAS8232

74.138

98.305

0.729
  prx Streptococcus pyogenes MGAS315

72.414

98.305

0.712
  prx Streptococcus pyogenes MGAS315

90.698

72.881

0.661
  prx Streptococcus pyogenes MGAS315

67.241

98.305

0.661
  prx Streptococcus pyogenes MGAS315

79.07

72.881

0.576
  prx Streptococcus pyogenes MGAS315

80.952

71.186

0.576