Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   GPA00_RS08890 Genome accession   NZ_CP046629
Coordinates   1806678..1808651 (-) Length   657 a.a.
NCBI ID   WP_157328409.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1801678..1813651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS08870 (GPA00_08870) amiF 1802184..1803110 (-) 927 WP_021142590.1 ATP-binding cassette domain-containing protein Regulator
  GPA00_RS08875 (GPA00_08875) amiE 1803103..1804173 (-) 1071 WP_021142591.1 ABC transporter ATP-binding protein Regulator
  GPA00_RS08880 (GPA00_08880) amiD 1804182..1805108 (-) 927 WP_021142592.1 oligopeptide ABC transporter permease OppC Regulator
  GPA00_RS08885 (GPA00_08885) amiC 1805108..1806610 (-) 1503 WP_045797779.1 ABC transporter permease Regulator
  GPA00_RS08890 (GPA00_08890) amiA 1806678..1808651 (-) 1974 WP_157328409.1 peptide ABC transporter substrate-binding protein Regulator
  GPA00_RS08895 (GPA00_08895) - 1809006..1809341 (-) 336 WP_074481574.1 metal-sulfur cluster assembly factor -
  GPA00_RS08900 (GPA00_08900) rpoD 1809364..1810473 (-) 1110 WP_024343868.1 RNA polymerase sigma factor RpoD -
  GPA00_RS08905 (GPA00_08905) dnaG 1810482..1812290 (-) 1809 WP_278007835.1 DNA primase -
  GPA00_RS08910 (GPA00_08910) mscL 1812408..1812791 (+) 384 WP_074560554.1 large conductance mechanosensitive channel protein MscL -
  GPA00_RS08915 (GPA00_08915) rpsU 1812864..1813040 (-) 177 WP_000048058.1 30S ribosomal protein S21 -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 73325.23 Da        Isoelectric Point: 5.4988

>NTDB_id=406331 GPA00_RS08890 WP_157328409.1 1806678..1808651(-) (amiA) [Streptococcus equinus strain CNU G6]
MFMKKYLTVAGVALLSVSLLQGCSNSKSTKQKSNVYSYVYVSDPNTLDYTASGRVTTSSVTTQGIDGLLENDKYGNLVPS
LAKDWKVSADGLTYTYKLRKGVMWYTSDGEEYAEVTANDFVTGLKHAADKKSDALYIVQNSIKGLDDYVSGATKDFSTVG
VKALDKYTVQYTLNKPETYWNSKTTYGVLQPVNKDFLKAKGKDFGSVDPSSILYNGPFILKSLTSKSSIEFDKNENYWDA
KHVKLDGVKLTYFDGSDPESLYKNFEKGNYSCSRLYPTKPGFKKIEKNHKNEINYSLQNQSTYFVVFNLNRKAYDFTSKN
SDTQKNDTHEAILNKDFRQAVTFAFNRTAYNSQNVGQEASTKSLRSMFVPPKFVSSDGKDFGDYVKDELGDNATWKDVDF
SDAKDGLYNVDKAKAAFSKAKSTLQSEGVQFPIHLDFPVDQTSDITTQQANSFKQSVEASLGKDNVVVDIQKESEEDYQR
TGYFAESADQKDYDLSQDSGWIPDYDDPSTYLDILNSDTGTSIKNSGIDSSTDEGKEVAQRVGLDQFNKLVTDANNVTDD
ITARYTDYAKAQAWLTDSAIIIPTASLGGTPSVSKVVPFSASYSTSGIKGSDCYKYYQLQDKPVTVKQYKKALDGWKKAK
DKSNTEYQEKLSEHIEK

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=406331 GPA00_RS08890 WP_157328409.1 1806678..1808651(-) (amiA) [Streptococcus equinus strain CNU G6]
ATGTTTATGAAAAAATATTTAACTGTCGCAGGAGTTGCACTTTTATCGGTTTCGCTTTTACAAGGATGTTCTAATTCAAA
ATCGACTAAGCAAAAATCAAATGTTTATTCTTATGTCTATGTTTCTGATCCGAATACACTAGATTATACAGCATCAGGTC
GAGTAACTACATCATCTGTAACAACTCAGGGAATAGATGGTTTGCTAGAGAATGATAAATATGGTAATTTAGTGCCTTCT
CTTGCAAAAGATTGGAAAGTTTCAGCTGATGGTTTAACTTATACCTATAAGTTGAGAAAAGGCGTTATGTGGTACACTTC
TGATGGGGAAGAATATGCAGAAGTTACGGCGAATGATTTTGTTACAGGATTAAAGCATGCAGCTGATAAGAAATCAGACG
CCCTTTACATTGTGCAAAATTCAATAAAAGGTTTGGATGATTATGTTAGTGGTGCTACAAAAGATTTTTCAACTGTTGGC
GTTAAGGCGTTAGATAAATATACTGTCCAGTATACTTTGAATAAACCTGAAACCTATTGGAATTCTAAGACGACCTATGG
AGTACTTCAACCAGTTAATAAAGATTTCTTGAAGGCAAAGGGTAAAGATTTTGGTTCTGTAGATCCATCTAGTATTCTTT
ATAATGGTCCGTTTATTTTGAAATCTTTGACTTCTAAATCTTCAATCGAATTTGATAAAAATGAAAATTATTGGGATGCT
AAGCACGTAAAACTTGATGGGGTTAAACTAACTTATTTTGATGGTTCAGATCCAGAATCTCTTTATAAAAATTTTGAAAA
AGGAAATTACAGCTGTTCAAGACTATACCCAACCAAACCAGGTTTCAAGAAAATTGAAAAGAACCATAAAAATGAAATTA
ATTACTCATTACAGAATCAATCAACCTATTTCGTTGTCTTTAATTTGAATCGTAAAGCTTATGATTTTACTTCAAAAAAC
AGTGATACTCAAAAAAATGATACCCATGAAGCTATTTTAAATAAAGACTTCCGTCAAGCTGTTACTTTTGCTTTTAACAG
AACAGCCTACAATTCACAAAATGTTGGTCAAGAGGCTTCAACTAAATCACTTCGTAGTATGTTTGTACCACCAAAATTTG
TGTCTTCTGATGGTAAGGATTTTGGTGATTATGTTAAAGATGAGTTAGGCGATAATGCAACTTGGAAAGATGTTGATTTT
TCAGATGCTAAAGATGGATTATACAATGTTGATAAGGCAAAAGCGGCATTTTCTAAAGCAAAATCTACATTGCAAAGTGA
GGGTGTTCAATTTCCAATCCACTTAGATTTTCCTGTAGATCAAACAAGTGATATTACGACACAACAAGCTAATTCATTTA
AGCAATCTGTGGAAGCATCACTCGGTAAGGATAACGTCGTTGTTGATATTCAAAAAGAAAGTGAAGAAGATTATCAACGT
ACAGGATATTTTGCAGAATCAGCTGATCAAAAGGATTATGATTTGTCTCAAGACTCTGGATGGATTCCCGATTATGATGA
TCCTTCTACTTATCTTGATATCTTAAATTCAGATACAGGTACTTCAATTAAGAATAGTGGTATTGATTCATCAACTGATG
AAGGTAAAGAAGTTGCACAAAGAGTAGGATTGGATCAGTTCAATAAATTAGTTACAGATGCAAATAATGTTACTGATGAT
ATAACTGCCCGTTATACAGATTATGCAAAAGCTCAAGCATGGTTGACGGATAGCGCTATCATTATACCAACAGCATCTTT
AGGTGGTACCCCATCAGTTTCAAAAGTCGTTCCATTTTCGGCTTCTTATTCAACATCTGGAATTAAAGGTAGCGACTGTT
ACAAATATTATCAATTGCAAGATAAGCCTGTTACGGTTAAACAATACAAAAAAGCTTTAGATGGTTGGAAAAAGGCCAAA
GATAAATCAAACACAGAATATCAAGAAAAGCTTTCTGAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

53.695

100

0.542
  amiA3 Streptococcus thermophilus LMG 18311

51.506

100

0.521
  amiA3 Streptococcus thermophilus LMD-9

51.054

100

0.516

Multiple sequence alignment