Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   GPA00_RS08885 Genome accession   NZ_CP046629
Coordinates   1805108..1806610 (-) Length   500 a.a.
NCBI ID   WP_045797779.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1800108..1811610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS08865 (GPA00_08865) cps2T 1800862..1802016 (-) 1155 WP_039690441.1 beta 1-4 rhamnosyltransferase Cps2T -
  GPA00_RS08870 (GPA00_08870) amiF 1802184..1803110 (-) 927 WP_021142590.1 ATP-binding cassette domain-containing protein Regulator
  GPA00_RS08875 (GPA00_08875) amiE 1803103..1804173 (-) 1071 WP_021142591.1 ABC transporter ATP-binding protein Regulator
  GPA00_RS08880 (GPA00_08880) amiD 1804182..1805108 (-) 927 WP_021142592.1 oligopeptide ABC transporter permease OppC Regulator
  GPA00_RS08885 (GPA00_08885) amiC 1805108..1806610 (-) 1503 WP_045797779.1 ABC transporter permease Regulator
  GPA00_RS08890 (GPA00_08890) amiA 1806678..1808651 (-) 1974 WP_157328409.1 peptide ABC transporter substrate-binding protein Regulator
  GPA00_RS08895 (GPA00_08895) - 1809006..1809341 (-) 336 WP_074481574.1 metal-sulfur cluster assembly factor -
  GPA00_RS08900 (GPA00_08900) rpoD 1809364..1810473 (-) 1110 WP_024343868.1 RNA polymerase sigma factor RpoD -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 55980.77 Da        Isoelectric Point: 10.2811

>NTDB_id=406330 GPA00_RS08885 WP_045797779.1 1805108..1806610(-) (amiC) [Streptococcus equinus strain CNU G6]
MKKYVGMRILRSLVSILLVTTLTYGIIYALVPRHLIFRQDPNYNKMVTTADKRINYENQIYSKTGYIEYKDSKDLSKIAS
TIDSKVTVDNTKKNKKIYQDCVDKLGKGWKLYQFPESKKFYAVREIPLYERVLKFYSNLIVIDHPWKIKDSSNPNLKRYV
RFENDPAIGPALVGSGTEHKYLIYFNGAFPFVHQHIVTMNLGISYPTYANVPILQVINQGQGKAKLKEVKFPTGKTKISS
VDIYTRTYKSPKEADAMAVNNFGKGDAYTATRSIYSDPSMVSNSVRIGVIGVLISYLLGLPIGLLMARFKNGFFDRFSTG
IVTFLLAVPSIAIIYAIRFIGSAIGLPDAFPTLGAHDWRSYVLPAFILGFLSIPGIVVWFRRYVVDLQNSDFVKFARSKG
LSENEISKKHLFKQAMVPIVNGIPEAILGTIVGATLTETIFAFPGMGKMLIDSIKATNNSMVVGLVFLFTSLSIISLLLG
DLLMVILDPRIKLSSKGGKK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=406330 GPA00_RS08885 WP_045797779.1 1805108..1806610(-) (amiC) [Streptococcus equinus strain CNU G6]
ATGAAAAAATATGTTGGAATGCGAATTCTGCGTTCGCTGGTATCGATTTTATTAGTAACGACATTAACTTACGGCATTAT
ATACGCTTTAGTACCGAGACACCTCATTTTTAGACAAGATCCTAATTATAATAAAATGGTGACAACAGCTGACAAGCGAA
TTAATTATGAAAATCAAATTTATAGTAAGACAGGTTATATTGAGTACAAAGATAGTAAAGATTTAAGTAAGATTGCTTCT
ACAATAGATAGTAAAGTCACCGTTGATAATACCAAAAAGAATAAAAAAATTTATCAAGATTGTGTCGATAAACTTGGAAA
AGGATGGAAACTTTACCAGTTTCCAGAAAGTAAAAAATTTTATGCAGTACGCGAAATTCCACTCTACGAAAGAGTGCTGA
AATTTTACTCTAATTTGATTGTGATTGATCATCCTTGGAAGATTAAGGATTCATCTAATCCAAATTTAAAACGCTATGTT
CGGTTTGAAAATGATCCTGCAATAGGTCCAGCTTTGGTTGGTTCAGGAACGGAGCATAAGTACTTGATTTACTTTAATGG
TGCCTTTCCATTTGTTCATCAACATATTGTGACGATGAATCTTGGTATTTCTTATCCAACTTATGCTAATGTGCCGATTT
TACAAGTAATTAATCAAGGTCAAGGGAAAGCAAAATTAAAAGAAGTTAAATTCCCAACGGGTAAAACTAAAATAAGTTCG
GTAGATATCTATACACGAACTTACAAATCACCTAAAGAAGCTGATGCAATGGCAGTCAATAATTTTGGAAAGGGTGATGC
TTATACTGCGACAAGAAGTATTTACTCAGATCCTTCAATGGTGTCCAATTCAGTTCGAATTGGTGTAATCGGTGTACTTA
TTTCATACTTGTTAGGGTTACCGATTGGACTTTTAATGGCTAGATTTAAGAATGGTTTTTTTGATCGTTTTTCAACAGGC
ATTGTTACGTTTTTGCTAGCTGTTCCTAGTATTGCTATTATTTATGCGATTCGTTTTATTGGTTCAGCGATTGGGTTACC
AGATGCTTTCCCAACTCTAGGAGCTCACGATTGGCGATCTTATGTATTGCCAGCATTTATTTTAGGATTTTTGAGTATTC
CAGGGATTGTCGTTTGGTTTAGACGTTATGTTGTTGATTTACAAAATAGTGATTTTGTGAAATTCGCTAGATCGAAAGGA
TTATCTGAAAACGAAATTTCGAAGAAACACTTATTTAAGCAAGCTATGGTTCCGATTGTTAATGGGATACCAGAGGCTAT
TTTAGGGACAATTGTAGGAGCTACTTTGACTGAAACGATTTTTGCTTTTCCTGGTATGGGGAAAATGTTGATTGATTCAA
TCAAGGCCACTAATAACTCGATGGTTGTAGGTTTAGTTTTCTTATTTACCAGCTTATCAATTATTTCTCTCTTGCTAGGT
GACCTTTTAATGGTTATATTGGACCCTCGAATTAAGTTATCATCAAAAGGAGGTAAAAAATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

63.727

99.8

0.636
  amiC Streptococcus thermophilus LMG 18311

63.727

99.8

0.636
  amiC Streptococcus salivarius strain HSISS4

63.527

99.8

0.634

Multiple sequence alignment