Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   GPA00_RS08870 Genome accession   NZ_CP046629
Coordinates   1802184..1803110 (-) Length   308 a.a.
NCBI ID   WP_021142590.1    Uniprot ID   A0A239RDH6
Organism   Streptococcus equinus strain CNU G6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1797184..1808110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS08850 (GPA00_08850) - 1797926..1799134 (-) 1209 WP_157328405.1 ABC transporter ATP-binding protein -
  GPA00_RS08855 (GPA00_08855) - 1799134..1799940 (-) 807 WP_039698098.1 ABC transporter permease -
  GPA00_RS08860 (GPA00_08860) - 1799937..1800872 (-) 936 WP_157328407.1 glycosyltransferase family 2 protein -
  GPA00_RS08865 (GPA00_08865) cps2T 1800862..1802016 (-) 1155 WP_039690441.1 beta 1-4 rhamnosyltransferase Cps2T -
  GPA00_RS08870 (GPA00_08870) amiF 1802184..1803110 (-) 927 WP_021142590.1 ATP-binding cassette domain-containing protein Regulator
  GPA00_RS08875 (GPA00_08875) amiE 1803103..1804173 (-) 1071 WP_021142591.1 ABC transporter ATP-binding protein Regulator
  GPA00_RS08880 (GPA00_08880) amiD 1804182..1805108 (-) 927 WP_021142592.1 oligopeptide ABC transporter permease OppC Regulator
  GPA00_RS08885 (GPA00_08885) amiC 1805108..1806610 (-) 1503 WP_045797779.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 35282.49 Da        Isoelectric Point: 6.2487

>NTDB_id=406327 GPA00_RS08870 WP_021142590.1 1802184..1803110(-) (amiF) [Streptococcus equinus strain CNU G6]
MPEKLVDIRNLEISFGEGSKKFTAVKNANFFINKGETFSLVGESGSGKTTIARAIVGLNETSAGEIIFEGKRINTRLSKA
EKGNLIQKIQMIFQDPAASLNERATVDYIISEGLYNFKLYKDEEERRQKVREIIEKVGLLPEHLTRYPHEFSGGQRQRIG
IARTLVMNPEFIIADEPISALDVSVRAQVLNLLKEIQRENGMTYLFIAHDLSVVRFISDRIAVIHQGVIVEIAETEELFH
HPIHPYTKSLLSAVPIPDPILERQKELVVYDPEQHDYTVDKPRMFEIKPNHFIWANQEEIKKYQQELL

Nucleotide


Download         Length: 927 bp        

>NTDB_id=406327 GPA00_RS08870 WP_021142590.1 1802184..1803110(-) (amiF) [Streptococcus equinus strain CNU G6]
ATGCCTGAAAAATTAGTAGATATTCGAAATTTAGAAATCTCATTTGGGGAGGGAAGTAAGAAATTTACTGCTGTAAAAAA
TGCGAATTTCTTTATCAACAAAGGAGAGACGTTCTCACTTGTTGGAGAATCAGGAAGTGGAAAAACAACGATTGCACGAG
CAATAGTAGGTCTTAATGAGACAAGTGCTGGAGAAATTATTTTTGAAGGTAAGAGAATCAATACGAGATTGAGTAAGGCT
GAAAAAGGAAATCTTATTCAAAAAATTCAGATGATATTTCAGGATCCAGCAGCTAGTTTAAATGAGCGAGCAACAGTAGA
TTATATCATTTCTGAAGGTCTTTATAATTTTAAATTATACAAAGACGAAGAAGAACGTAGACAAAAAGTTAGAGAAATTA
TTGAAAAGGTAGGTTTGTTACCAGAACATTTAACACGATATCCTCATGAATTTTCAGGGGGACAACGACAACGTATTGGA
ATTGCAAGAACGCTTGTAATGAATCCAGAATTTATTATAGCTGATGAACCAATTTCGGCTTTGGATGTTTCGGTTAGAGC
ACAGGTACTTAATTTGTTGAAAGAGATTCAAAGAGAAAATGGTATGACATACTTGTTTATCGCGCACGATCTGTCAGTTG
TACGTTTCATTTCTGATCGTATTGCAGTTATTCATCAAGGGGTGATTGTTGAAATTGCTGAAACTGAGGAGTTATTTCAT
CATCCTATTCACCCTTACACTAAATCTCTGTTGTCTGCAGTTCCTATTCCAGATCCAATCTTAGAACGCCAAAAAGAATT
AGTTGTCTACGATCCGGAACAACATGATTATACAGTTGACAAGCCTCGAATGTTTGAAATAAAACCCAATCATTTTATTT
GGGCTAATCAAGAAGAAATTAAAAAGTATCAACAAGAGTTATTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239RDH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

78.758

99.351

0.782
  amiF Streptococcus thermophilus LMG 18311

78.431

99.351

0.779
  amiF Streptococcus salivarius strain HSISS4

77.778

99.351

0.773

Multiple sequence alignment