Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   GPA00_RS08880 Genome accession   NZ_CP046629
Coordinates   1804182..1805108 (-) Length   308 a.a.
NCBI ID   WP_021142592.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1799182..1810108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS08860 (GPA00_08860) - 1799937..1800872 (-) 936 WP_157328407.1 glycosyltransferase family 2 protein -
  GPA00_RS08865 (GPA00_08865) cps2T 1800862..1802016 (-) 1155 WP_039690441.1 beta 1-4 rhamnosyltransferase Cps2T -
  GPA00_RS08870 (GPA00_08870) amiF 1802184..1803110 (-) 927 WP_021142590.1 ATP-binding cassette domain-containing protein Regulator
  GPA00_RS08875 (GPA00_08875) amiE 1803103..1804173 (-) 1071 WP_021142591.1 ABC transporter ATP-binding protein Regulator
  GPA00_RS08880 (GPA00_08880) amiD 1804182..1805108 (-) 927 WP_021142592.1 oligopeptide ABC transporter permease OppC Regulator
  GPA00_RS08885 (GPA00_08885) amiC 1805108..1806610 (-) 1503 WP_045797779.1 ABC transporter permease Regulator
  GPA00_RS08890 (GPA00_08890) amiA 1806678..1808651 (-) 1974 WP_157328409.1 peptide ABC transporter substrate-binding protein Regulator
  GPA00_RS08895 (GPA00_08895) - 1809006..1809341 (-) 336 WP_074481574.1 metal-sulfur cluster assembly factor -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34990.07 Da        Isoelectric Point: 8.8338

>NTDB_id=406329 GPA00_RS08880 WP_021142592.1 1804182..1805108(-) (amiD) [Streptococcus equinus strain CNU G6]
MEKIDKKQFEFVSLDSSASEIIDAPTYSYWKSVFKQFFSKKSTFFMLAILIAIIFMSFVYPFFVHCNFNDVSNINDFSKR
YVWPNSQYWFGTDKDGRSLFDCVWYGARNSILISVLATVINMILGVVIGGIWGVSKTVDTIMIEVYNVVSNIPQLLIIMV
LTYSLGAGFWNMILAFCITGWIGIAYSIRVQILRYRDLEYNLASQILGTSKFRIVVKNLLPQLISVIVTMVSQLLPSYIS
YEAFLSYFGIGLPISVPSLGRLISNYSSNLTTNAYLFWIPLTVLVLVSLPLYIIGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=406329 GPA00_RS08880 WP_021142592.1 1804182..1805108(-) (amiD) [Streptococcus equinus strain CNU G6]
GTGGAAAAAATTGATAAGAAACAATTTGAATTTGTTAGTTTAGATAGTTCAGCTTCAGAAATTATCGATGCTCCAACTTA
TTCTTATTGGAAATCTGTTTTTAAACAATTTTTCTCTAAAAAATCTACTTTCTTTATGTTAGCAATATTGATTGCAATCA
TTTTTATGAGTTTTGTCTATCCATTCTTTGTTCATTGTAATTTTAATGATGTCAGTAATATTAATGACTTTTCGAAACGT
TATGTTTGGCCGAATAGTCAGTATTGGTTTGGTACGGATAAAGATGGTAGATCTTTATTTGATTGTGTATGGTACGGTGC
TAGAAATTCTATTTTAATTTCTGTTTTAGCAACAGTTATTAATATGATTTTAGGGGTTGTTATTGGTGGCATATGGGGTG
TCTCAAAGACAGTTGATACTATTATGATTGAGGTATATAACGTTGTCTCTAATATTCCTCAGTTGTTAATTATTATGGTC
TTAACCTATTCTTTGGGTGCAGGTTTTTGGAATATGATACTTGCATTCTGTATTACAGGATGGATTGGAATTGCTTATTC
GATTCGTGTCCAAATCTTACGTTATCGTGATTTAGAATACAATCTTGCTAGTCAAATTTTAGGAACATCAAAATTTAGAA
TTGTTGTTAAGAATTTATTGCCACAACTGATTTCTGTAATTGTGACTATGGTATCTCAGTTATTACCATCCTACATTTCA
TATGAAGCTTTTCTTTCTTATTTTGGTATTGGGCTTCCAATTTCAGTTCCAAGTCTAGGGCGTTTAATTTCAAATTATTC
CTCTAATTTAACGACTAATGCTTACTTATTTTGGATTCCTCTGACGGTTTTGGTATTGGTATCTTTGCCGTTATATATCA
TTGGGCAAAATCTTGCTGATGCAAGTGATCCAAGGACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

71.429

100

0.714
  amiD Streptococcus thermophilus LMG 18311

70.455

100

0.705
  amiD Streptococcus thermophilus LMD-9

70.455

100

0.705

Multiple sequence alignment