Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   GO596_RS04000 Genome accession   NZ_CP046628
Coordinates   795094..796467 (+) Length   457 a.a.
NCBI ID   WP_157339242.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 790094..801467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS03970 (GO596_03970) comE/comE1 790219..790950 (+) 732 WP_157339238.1 response regulator transcription factor Regulator
  GO596_RS03975 (GO596_03975) - 790955..792265 (+) 1311 WP_157339239.1 sensor histidine kinase -
  GO596_RS09440 comC/comC1 792286..792432 (-) 147 WP_169741101.1 hypothetical protein Regulator
  GO596_RS03980 (GO596_03980) - 792620..792916 (+) 297 WP_157339240.1 DUF3884 family protein -
  GO596_RS03985 (GO596_03985) - 792936..793241 (+) 306 WP_024344359.1 bacteriocin immunity protein -
  GO596_RS03990 (GO596_03990) - 793273..793566 (+) 294 WP_157339241.1 bacteriocin immunity protein -
  GO596_RS03995 (GO596_03995) comD/comD3 793914..795104 (+) 1191 WP_232516874.1 sensor histidine kinase Regulator
  GO596_RS04000 (GO596_04000) comD/comD3 795094..796467 (+) 1374 WP_157339242.1 GHKL domain-containing protein Regulator
  GO596_RS04005 (GO596_04005) comD/comD3 796840..797853 (+) 1014 WP_232516875.1 sensor histidine kinase Regulator
  GO596_RS04010 (GO596_04010) comD/comD3 797850..799241 (+) 1392 WP_157339244.1 GHKL domain-containing protein Regulator
  GO596_RS04015 (GO596_04015) comE/comE2 799862..800590 (+) 729 WP_074628324.1 LytR/AlgR family response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 52620.33 Da        Isoelectric Point: 6.2663

>NTDB_id=406240 GO596_RS04000 WP_157339242.1 795094..796467(+) (comD/comD3) [Streptococcus equinus strain CNU 77-23]
MLNNLIVFFGFIVNLIGFILLGILFQQITKYKLSLKEWIFFLLEIEVLLPIVNGILLSALNINPYLVKESTIYLVALYFI
VISYKRDSKIGFRYHFFYGLYPIAFYIILHNSFFIICQSIFSIKIDLTNPSLIVVLSGIEPFVVYYLVSQWLNIDISNVS
QSLKKYIKPKIFKIINTLMVFYFLLVDALGVLKPFHNADNNTIKAIIAFVYFVLLFAFLFYLNFRHGQEQKNELLRNQEM
ELAALENYSKHVESLYQEVRSFRHDYANVLMSLKVGIDQGDLDNIKKIYEEITADSAKLVKNNKFDLTRLANISDSAVKS
LMSAKFLEAENRGIEISLEVSEPMKNPKIPLISYIRILSILFDNAIEAALESENPKIAVANFYQDGDFVFIIENSTKEKS
VDLSKIFQRGYSTKGENRGLGLATLVDFQDDYENLSVGTSSFDYKFTQVVRVYEGEN

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=406240 GO596_RS04000 WP_157339242.1 795094..796467(+) (comD/comD3) [Streptococcus equinus strain CNU 77-23]
ATGTTGAATAATTTAATAGTATTTTTTGGTTTTATTGTTAATCTTATAGGTTTTATTCTACTAGGAATATTATTTCAGCA
AATTACTAAATATAAGTTATCTTTAAAAGAATGGATTTTCTTTTTGCTTGAGATTGAGGTTCTTTTACCAATAGTGAATG
GTATTCTTCTTAGTGCATTAAATATAAATCCTTATCTGGTTAAAGAAAGTACTATTTATTTAGTTGCATTATATTTCATT
GTTATTTCTTATAAACGTGATTCTAAAATAGGATTTAGATATCATTTCTTTTACGGACTATATCCTATTGCGTTCTATAT
TATTTTGCATAATTCTTTCTTCATTATTTGCCAATCCATTTTTTCGATAAAGATAGATCTTACAAATCCATCATTGATAG
TTGTACTATCAGGAATTGAACCATTTGTTGTGTATTATTTAGTTTCGCAATGGTTAAATATTGATATTTCAAATGTAAGT
CAAAGTTTAAAAAAATATATCAAACCAAAAATTTTTAAAATTATTAACACCTTGATGGTTTTCTACTTTTTACTCGTAGA
TGCCCTTGGTGTTTTAAAACCTTTTCATAATGCTGATAATAATACGATAAAGGCAATTATTGCTTTCGTCTATTTCGTTC
TCCTTTTTGCTTTCCTCTTCTATCTTAATTTCCGTCATGGGCAGGAGCAGAAAAATGAGCTGCTCCGCAATCAGGAAATG
GAGCTTGCGGCTTTAGAAAATTACAGCAAGCACGTGGAGAGTCTGTACCAAGAAGTGCGCAGTTTTCGCCATGATTATGC
CAACGTTTTGATGAGCTTGAAGGTTGGGATAGACCAAGGTGACCTTGATAATATCAAGAAAATTTACGAAGAGATCACAG
CTGACTCAGCAAAGCTGGTCAAAAACAATAAGTTTGACTTGACGCGATTAGCAAATATTTCAGACAGTGCCGTCAAGAGT
CTCATGTCAGCTAAATTTTTAGAGGCTGAAAATCGTGGCATTGAAATTAGTTTAGAAGTGTCAGAACCGATGAAAAATCC
CAAAATCCCACTGATTTCTTACATTCGAATTTTATCAATTTTGTTTGACAATGCCATTGAGGCTGCTTTAGAGTCGGAAA
ATCCCAAAATCGCAGTAGCGAATTTTTACCAAGATGGAGATTTTGTGTTTATCATTGAAAATTCGACTAAGGAAAAATCT
GTGGACTTGAGTAAGATTTTTCAGCGTGGGTACTCAACAAAAGGGGAGAATCGCGGACTTGGACTTGCGACATTGGTTGA
TTTTCAGGATGATTACGAGAATTTGTCAGTTGGAACCAGCAGTTTTGATTACAAATTTACGCAAGTTGTGAGAGTTTATG
AGGGGGAAAATTAA

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(355-448)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

61.853

100

0.628
  comD/comD2 Streptococcus equinus JB1

82.484

68.709

0.567

Multiple sequence alignment