Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   GO596_RS04010 Genome accession   NZ_CP046628
Coordinates   797850..799241 (+) Length   463 a.a.
NCBI ID   WP_157339244.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 792850..804241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS03985 (GO596_03985) - 792936..793241 (+) 306 WP_024344359.1 bacteriocin immunity protein -
  GO596_RS03990 (GO596_03990) - 793273..793566 (+) 294 WP_157339241.1 bacteriocin immunity protein -
  GO596_RS03995 (GO596_03995) comD/comD3 793914..795104 (+) 1191 WP_232516874.1 sensor histidine kinase Regulator
  GO596_RS04000 (GO596_04000) comD/comD3 795094..796467 (+) 1374 WP_157339242.1 GHKL domain-containing protein Regulator
  GO596_RS04005 (GO596_04005) comD/comD3 796840..797853 (+) 1014 WP_232516875.1 sensor histidine kinase Regulator
  GO596_RS04010 (GO596_04010) comD/comD3 797850..799241 (+) 1392 WP_157339244.1 GHKL domain-containing protein Regulator
  GO596_RS04015 (GO596_04015) comE/comE2 799862..800590 (+) 729 WP_074628324.1 LytR/AlgR family response regulator transcription factor Regulator
  GO596_RS04025 (GO596_04025) rsgA 800882..801754 (+) 873 WP_157339245.1 ribosome small subunit-dependent GTPase A -
  GO596_RS04030 (GO596_04030) rpe 801761..802423 (+) 663 WP_157339246.1 ribulose-phosphate 3-epimerase -
  GO596_RS04035 (GO596_04035) - 802416..803048 (+) 633 WP_157339247.1 thiamine diphosphokinase -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 53333.44 Da        Isoelectric Point: 7.1706

>NTDB_id=406242 GO596_RS04010 WP_157339244.1 797850..799241(+) (comD/comD3) [Streptococcus equinus strain CNU 77-23]
MIEIIKYIIALLLNFWAFVIIGFLFQQITKTKITLLEWFAIIMFVQIGSIAFGNLIGNTLKIGLLVIKDIVVIFGFMIIS
CRHNPKLEIRYHIFYALYPNSLYLIIQGVYGYTMMGIFSIKITPMAAQVHSWLVWIITITAIFAPPIFYHLMSKWLNIDI
SNVRKTLKHYLSARALRVVNVLLLIFYPGIECFAAILPFEKMSTNRNVYRLTFLVYFLLLFAFLFYLNFRHGQEQKEELL
RNQEMELKALENYSKHVESLYQEVRSFRHDYANVLMSLKVGIDQGDLDNIKKIYEEITADSAKLVKNNKFDLTRLANISD
SAVKSLMSAKFLEAENRGIEISLEVAEPMKNPAIPLISYIRILSILFDNAIEGALESENPKIAVANFYQDGDFVFIIENS
TREKSVDLSKIFQRGYSTKGENRGLGLATLVDFQDDYENLSVETSSLDYKFTQVVRVYEGENG

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=406242 GO596_RS04010 WP_157339244.1 797850..799241(+) (comD/comD3) [Streptococcus equinus strain CNU 77-23]
ATGATTGAAATTATTAAATATATTATTGCATTGCTTTTGAATTTTTGGGCATTTGTTATAATTGGTTTTCTTTTCCAGCA
AATAACTAAAACTAAGATAACTCTCTTAGAATGGTTTGCGATAATTATGTTTGTCCAAATTGGGTCTATTGCTTTTGGCA
ACCTAATTGGCAATACTTTAAAGATAGGTTTATTAGTTATAAAAGATATCGTTGTTATTTTTGGTTTTATGATAATATCA
TGCAGACACAACCCAAAACTAGAAATCAGATATCACATTTTTTATGCTTTGTATCCAAATAGTCTCTATTTGATTATACA
AGGAGTTTATGGATATACAATGATGGGGATTTTTTCAATAAAAATAACTCCGATGGCAGCCCAAGTACATTCTTGGCTAG
TTTGGATTATCACTATTACAGCTATTTTTGCTCCACCAATTTTTTATCATTTGATGTCGAAATGGTTAAATATTGATATT
TCAAATGTTCGAAAGACGCTAAAACATTATCTTAGTGCAAGAGCATTAAGAGTTGTAAATGTTCTATTGCTGATTTTTTA
TCCGGGTATAGAATGTTTTGCAGCAATATTACCTTTTGAAAAAATGTCAACGAATAGAAATGTTTATAGACTAACTTTTC
TTGTCTATTTTCTTCTCCTTTTTGCCTTCCTCTTCTATCTTAACTTCCGTCACGGGCAGGAGCAGAAAGAAGAGTTGCTT
CGTAATCAGGAAATGGAGCTTAAAGCTTTGGAAAATTATAGTAAACATGTGGAGAGTTTGTACCAAGAAGTACGCAGTTT
TCGTCACGATTACGCTAATGTTTTGATGAGTTTGAAGGTTGGGATAGATCAAGGAGACCTTGATAATATCAAGAAAATTT
ACGAAGAAATCACGGCTGACTCAGCGAAGCTGGTCAAAAACAATAAGTTTGACTTGACGCGACTAGCAAATATTTCAGAC
AGTGCCGTCAAGAGTCTCATGTCAGCTAAATTTTTAGAGGCTGAAAATCGTGGCATTGAAATCAGTTTAGAAGTGGCAGA
GCCAATGAAAAATCCAGCTATTCCACTGATTTCTTACATTCGAATTTTATCGATTTTGTTTGATAACGCTATCGAAGGAG
CTTTAGAGTCAGAAAATCCAAAAATCGCAGTAGCGAATTTTTATCAAGACGGAGATTTTGTGTTTATTATTGAAAATTCG
ACTAGGGAAAAATCTGTGGATTTGAGTAAAATTTTTCAGCGTGGGTACTCAACAAAAGGTGAGAATCGCGGACTTGGGCT
TGCGACATTGGTTGATTTTCAGGATGATTACGAGAATTTGTCAGTTGAAACTAGCAGTCTCGACTACAAATTTACACAAG
TTGTGAGAGTTTATGAGGGGGAAAATGGCTAA

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(360-455)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

73.696

99.352

0.732
  comD/comD2 Streptococcus equinus JB1

72.93

67.819

0.495

Multiple sequence alignment