Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD1   Type   Regulator
Locus tag   GO995_RS08505 Genome accession   NZ_CP046624
Coordinates   1704672..1705943 (-) Length   423 a.a.
NCBI ID   WP_238385870.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_G3     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1699672..1710943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO995_RS08475 (GO995_08475) comD/comD3 1700327..1701709 (-) 1383 WP_157629395.1 sensor histidine kinase Regulator
  GO995_RS08480 (GO995_08480) comD/comD2 1701722..1702654 (-) 933 WP_238385869.1 sensor histidine kinase Regulator
  GO995_RS08485 (GO995_08485) - 1703447..1703740 (-) 294 WP_157629397.1 bacteriocin immunity protein -
  GO995_RS08490 (GO995_08490) - 1703768..1704073 (-) 306 WP_157629398.1 bacteriocin immunity protein -
  GO995_RS08495 (GO995_08495) - 1704086..1704235 (-) 150 WP_093815783.1 bacteriocin -
  GO995_RS08500 (GO995_08500) comC/comC1 1704497..1704649 (+) 153 WP_157327338.1 hypothetical protein Regulator
  GO995_RS08505 (GO995_08505) comD/comD1 1704672..1705943 (-) 1272 WP_238385870.1 sensor histidine kinase Regulator
  GO995_RS08510 (GO995_08510) comE/comE1 1706003..1706734 (-) 732 WP_157629399.1 response regulator transcription factor Regulator
  GO995_RS08515 (GO995_08515) - 1707765..1708838 (-) 1074 WP_238385871.1 glycosyltransferase family 2 protein -
  GO995_RS08520 (GO995_08520) - 1709060..1709359 (-) 300 WP_157327346.1 DUF3884 family protein -
  GO995_RS08525 (GO995_08525) - 1709385..1709567 (-) 183 WP_157327348.1 hypothetical protein -
  GO995_RS08530 (GO995_08530) - 1709633..1709857 (-) 225 WP_039697856.1 helix-turn-helix domain-containing protein -
  GO995_RS08535 (GO995_08535) - 1709847..1710845 (-) 999 WP_157629400.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 48817.00 Da        Isoelectric Point: 5.7123

>NTDB_id=406190 GO995_RS08505 WP_238385870.1 1704672..1705943(-) (comD/comD1) [Streptococcus ruminicola strain CNU_G3]
MTIFANVRGEKLNLLEIITISLSFFIIDIIWCPTAIVRILILYLISYLNRRDLPRSLHIFNGSFPWVIDSIIIRTIGFFI
LPIFGLDYIDVSKNNLLYVIVQFSVLLVYLLSTKLSKIDFQTFIEISEIKSLRKKLVFTDVTMIFYYIAIECLTSAEAEF
GGLIPTLIYRQWLVFLYFIFFILMMVYINRSHQGWLEKEIASAREQELKSLSIYSKKVEGLYEELRAFRHDYANILVSLK
EGIDQDDMGIVRKIYESVLEDSSDFIQSSKFNISRLANIKDDAIKSLLSAKFLEAEANHIEVNLEVKDKIGVPDIPLLDY
IRLLAILCDNAIEAALEAENPAITIACFFQDDDYVLIVDNTTKEESVPVNLIYQKDYSSKGHGRGIGLTTIHQMMRKYSN
LSVQTNSKNYHFCQTIRIKKAFD

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=406190 GO995_RS08505 WP_238385870.1 1704672..1705943(-) (comD/comD1) [Streptococcus ruminicola strain CNU_G3]
ATGACAATTTTTGCGAATGTAAGAGGAGAAAAACTAAACTTACTGGAAATTATAACGATATCATTATCCTTTTTTATTAT
TGATATTATTTGGTGTCCTACTGCGATAGTAAGAATCTTGATACTATATTTAATATCTTATCTTAATAGAAGAGACCTGC
CACGATCTTTACATATATTTAATGGTAGTTTTCCATGGGTGATTGATAGCATTATTATTAGGACAATTGGATTTTTTATT
CTCCCGATATTTGGGTTAGACTATATTGATGTAAGTAAAAATAATCTATTGTATGTTATTGTACAATTTTCTGTATTATT
GGTTTATCTTTTGAGTACCAAACTATCAAAAATTGATTTTCAAACTTTTATTGAGATTAGTGAAATCAAATCTCTGCGTA
AAAAGTTAGTTTTTACAGATGTGACAATGATTTTTTATTATATTGCGATTGAATGTTTGACATCAGCTGAAGCGGAATTT
GGAGGGTTGATTCCAACATTAATCTACCGACAGTGGCTGGTTTTTCTATATTTTATATTTTTTATTCTTATGATGGTTTA
CATAAACCGTTCTCACCAAGGTTGGTTAGAAAAAGAGATTGCTAGTGCCCGTGAGCAAGAGTTGAAATCTTTATCAATTT
ACAGTAAAAAGGTTGAAGGTTTATACGAGGAGTTGCGTGCTTTTCGTCATGATTATGCTAATATCTTGGTCAGCTTAAAA
GAGGGAATTGATCAAGATGACATGGGAATAGTCCGAAAAATCTATGAATCTGTTCTGGAGGATTCGTCAGACTTCATTCA
AAGTAGTAAATTTAATATCAGTCGTCTAGCTAATATCAAAGACGATGCCATAAAGAGTCTTTTGTCAGCTAAATTTTTAG
AGGCTGAAGCCAATCATATTGAAGTAAATTTAGAGGTTAAAGACAAGATTGGAGTACCCGATATTCCGCTACTAGATTAT
ATTCGCTTACTTGCTATTTTATGTGATAATGCTATTGAAGCAGCGCTCGAGGCAGAAAATCCAGCCATCACTATTGCTTG
TTTTTTTCAAGATGATGACTATGTGCTAATTGTAGATAATACGACTAAGGAAGAAAGTGTCCCAGTTAATTTGATTTATC
AAAAAGATTATTCAAGTAAGGGGCATGGACGAGGTATTGGACTTACAACGATTCATCAGATGATGCGAAAATATTCCAAT
CTTTCTGTTCAAACAAATAGTAAAAATTACCATTTTTGCCAAACCATACGTATTAAAAAAGCATTCGATTAA

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(318-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD1 Streptococcus equinus JB1

89.224

54.846

0.489
  comD/comD3 Streptococcus equinus JB1

37.111

100

0.395

Multiple sequence alignment