Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC/comC1   Type   Regulator
Locus tag   GO995_RS08500 Genome accession   NZ_CP046624
Coordinates   1704497..1704649 (+) Length   50 a.a.
NCBI ID   WP_157327338.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_G3     
Function   binding to ComD; induce autophosphorylation of ComD (predicted from homology)   
Competence regulation

Genomic Context

Location: 1699497..1709649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO995_RS08475 (GO995_08475) comD/comD3 1700327..1701709 (-) 1383 WP_157629395.1 sensor histidine kinase Regulator
  GO995_RS08480 (GO995_08480) comD/comD2 1701722..1702654 (-) 933 WP_238385869.1 sensor histidine kinase Regulator
  GO995_RS08485 (GO995_08485) - 1703447..1703740 (-) 294 WP_157629397.1 bacteriocin immunity protein -
  GO995_RS08490 (GO995_08490) - 1703768..1704073 (-) 306 WP_157629398.1 bacteriocin immunity protein -
  GO995_RS08495 (GO995_08495) - 1704086..1704235 (-) 150 WP_093815783.1 bacteriocin -
  GO995_RS08500 (GO995_08500) comC/comC1 1704497..1704649 (+) 153 WP_157327338.1 hypothetical protein Regulator
  GO995_RS08505 (GO995_08505) comD/comD1 1704672..1705943 (-) 1272 WP_238385870.1 sensor histidine kinase Regulator
  GO995_RS08510 (GO995_08510) comE/comE1 1706003..1706734 (-) 732 WP_157629399.1 response regulator transcription factor Regulator
  GO995_RS08515 (GO995_08515) - 1707765..1708838 (-) 1074 WP_238385871.1 glycosyltransferase family 2 protein -
  GO995_RS08520 (GO995_08520) - 1709060..1709359 (-) 300 WP_157327346.1 DUF3884 family protein -
  GO995_RS08525 (GO995_08525) - 1709385..1709567 (-) 183 WP_157327348.1 hypothetical protein -

Sequence

Protein


Download         Length: 50 a.a.        Molecular weight: 5625.47 Da        Isoelectric Point: 4.9306

>NTDB_id=406189 GO995_RS08500 WP_157327338.1 1704497..1704649(+) (comC/comC1) [Streptococcus ruminicola strain CNU_G3]
MTEWKMSELESVKELTDSDLEKTVGGDNIPLLTGVGDLFKIFKGKNKNHM

Nucleotide


Download         Length: 153 bp        

>NTDB_id=406189 GO995_RS08500 WP_157327338.1 1704497..1704649(+) (comC/comC1) [Streptococcus ruminicola strain CNU_G3]
ATGACAGAATGGAAAATGTCAGAGTTAGAATCAGTCAAAGAATTGACTGATTCTGATTTGGAGAAGACAGTTGGAGGGGA
TAATATTCCTCTACTTACTGGTGTTGGTGATTTATTTAAAATTTTTAAAGGAAAAAATAAAAATCACATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC/comC1 Streptococcus equinus JB1

77.551

98

0.76

Multiple sequence alignment