Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   GO995_RS08475 Genome accession   NZ_CP046624
Coordinates   1700327..1701709 (-) Length   460 a.a.
NCBI ID   WP_157629395.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_G3     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1695327..1706709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO995_RS08450 (GO995_08450) - 1696448..1697080 (-) 633 WP_157629394.1 thiamine diphosphokinase -
  GO995_RS08455 (GO995_08455) rpe 1697073..1697735 (-) 663 WP_074560922.1 ribulose-phosphate 3-epimerase -
  GO995_RS08460 (GO995_08460) rsgA 1697742..1698614 (-) 873 WP_006531894.1 ribosome small subunit-dependent GTPase A -
  GO995_RS08470 (GO995_08470) comE/comE2 1698932..1699666 (-) 735 WP_052071091.1 LytR/AlgR family response regulator transcription factor Regulator
  GO995_RS08475 (GO995_08475) comD/comD3 1700327..1701709 (-) 1383 WP_157629395.1 sensor histidine kinase Regulator
  GO995_RS08480 (GO995_08480) comD/comD2 1701722..1702654 (-) 933 WP_238385869.1 sensor histidine kinase Regulator
  GO995_RS08485 (GO995_08485) - 1703447..1703740 (-) 294 WP_157629397.1 bacteriocin immunity protein -
  GO995_RS08490 (GO995_08490) - 1703768..1704073 (-) 306 WP_157629398.1 bacteriocin immunity protein -
  GO995_RS08495 (GO995_08495) - 1704086..1704235 (-) 150 WP_093815783.1 bacteriocin -
  GO995_RS08500 (GO995_08500) comC/comC1 1704497..1704649 (+) 153 WP_157327338.1 hypothetical protein Regulator
  GO995_RS08505 (GO995_08505) comD/comD1 1704672..1705943 (-) 1272 WP_238385870.1 sensor histidine kinase Regulator

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 52844.97 Da        Isoelectric Point: 6.3984

>NTDB_id=406187 GO995_RS08475 WP_157629395.1 1700327..1701709(-) (comD/comD3) [Streptococcus ruminicola strain CNU_G3]
MIEIIRFIITVLLNFFGYIIIGFLFQQITKTKITLLEWCAIIMFVQIGSIAFGVLAGNTLKIGLLVIKDIVIILGFMLIS
YRHNPKLEIRYHIFYALYPNNLYMIIQGVFGYTIMGLFSIKITPMAAQVHSWLVWLITTIAIFVPPIFYHLLSKWLNIDI
SNVSKTIKYYVSPKMLGIVNVLMLIFCPGMECFAAIAPFEDMSTNRNIYRAVIFLYFILLFIFLFYLNFRHGQEQKNELL
RNQEMELAALENYSKHVESLYQEVRSFRHDYANILMSLKVGIDQGNLDDIKKIYDEITADSTKLVKNNKFDLTRLANITD
SGVKSLMSAKFLQAENQGIAISLEVAEKMGNPSIPLISYIRILSILFDNAIEAALESAEPRISVANFYQDDEFVFMIENS
TKEKSVDLGKIFERGYSTKGDNRGLGLATLMDFQDDYENLSVETRSSDYKFTQVVRIYEA

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=406187 GO995_RS08475 WP_157629395.1 1700327..1701709(-) (comD/comD3) [Streptococcus ruminicola strain CNU_G3]
ATGATTGAGATTATTAGATTTATTATTACAGTTCTTTTGAATTTTTTTGGATATATCATAATAGGTTTTCTTTTCCAACA
AATAACTAAAACTAAGATAACCCTCCTTGAGTGGTGTGCAATAATAATGTTTGTTCAAATTGGGTCGATTGCTTTTGGTG
TTTTAGCTGGTAATACTTTAAAGATAGGATTATTAGTTATAAAAGATATTGTCATTATTTTAGGTTTTATGCTGATATCA
TATAGACATAATCCAAAATTAGAAATCAGATATCATATTTTTTATGCCTTATATCCTAATAATCTTTATATGATTATACA
AGGAGTGTTTGGCTATACAATAATGGGACTTTTTTCAATAAAAATAACTCCGATGGCAGCTCAAGTACATTCTTGGCTAG
TCTGGCTCATTACAACTATAGCTATTTTTGTTCCACCAATTTTTTATCACTTGCTTTCGAAATGGTTAAATATAGACATT
TCAAATGTCAGCAAGACTATTAAGTATTATGTTAGTCCGAAAATGCTGGGAATTGTAAATGTTTTAATGCTAATATTTTG
TCCAGGAATGGAATGTTTTGCGGCTATAGCGCCTTTTGAGGATATGTCAACGAATAGAAATATTTATAGAGCAGTTATCT
TCCTCTATTTCATTCTTCTTTTTATTTTCCTCTTTTATCTCAATTTTCGTCATGGGCAAGAGCAGAAAAACGAATTGCTT
CGCAATCAGGAGATGGAATTGGCGGCCTTGGAAAATTATAGCAAACACGTGGAAAGCCTTTATCAAGAAGTGCGCAGTTT
CAGGCATGACTACGCTAATATTCTGATGAGTTTAAAGGTTGGAATTGATCAAGGCAATCTTGATGACATCAAGAAAATTT
ACGACGAAATCACGGCCGATTCGACGAAACTGGTCAAAAATAATAAATTTGACTTGACTCGTTTGGCTAACATCACAGAC
AGCGGCGTCAAAAGTCTCATGTCAGCCAAATTCTTGCAAGCTGAAAATCAAGGGATTGCGATTAGCTTGGAAGTTGCTGA
AAAAATGGGAAATCCTAGCATTCCATTGATTTCCTACATCCGAATTTTGTCAATTTTGTTTGACAATGCCATAGAAGCTG
CTTTGGAGTCTGCGGAGCCAAGAATCTCAGTCGCTAATTTTTACCAAGATGATGAGTTTGTTTTTATGATTGAAAATTCC
ACTAAGGAGAAATCAGTGGATTTAGGCAAGATTTTTGAGCGTGGCTACTCAACCAAAGGAGATAATCGCGGCCTCGGCCT
AGCGACGCTAATGGATTTTCAAGATGACTACGAAAATTTATCGGTTGAAACCCGCAGTTCAGATTATAAATTTACACAAG
TAGTGAGAATTTACGAGGCGTAA

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(360-457)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

78.355

100

0.787
  comD/comD2 Streptococcus equinus JB1

80.769

67.826

0.548

Multiple sequence alignment