Detailed information NTG0405562

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: GNK04_RS18990
• Genome accession: NZ_CP046564
• Coordinates: 3667994..3668578 (+)
• Length: 194 a.a.
• NCBI ID: WP_098445023.1
• Uniprot ID: -
• Organism: Bacillus sp. N1-1
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3662994..3673578

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GNK04_RS18960 (GNK04_18955)	-	3663752..3664783 (-)	1032	WP_159787722.1	sugar-binding transcriptional regulator	-
GNK04_RS18965 (GNK04_18960)	-	3664934..3665170 (-)	237	WP_159784937.1	glutaredoxin family protein	-
GNK04_RS18970 (GNK04_18965)	rpoN	3665255..3666550 (-)	1296	WP_159784940.1	RNA polymerase factor sigma-54	-
GNK04_RS18975 (GNK04_18970)	-	3666745..3667020 (+)	276	WP_159784943.1	hypothetical protein	-
GNK04_RS18985 (GNK04_18980)	-	3667443..3667829 (+)	387	WP_159784946.1	hypothetical protein	-
GNK04_RS18990 (GNK04_18985)	clpP	3667994..3668578 (+)	585	WP_098445023.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
GNK04_RS18995 (GNK04_18990)	-	3668696..3668950 (-)	255	WP_159784949.1	HPr family phosphocarrier protein	-
GNK04_RS19000 (GNK04_18995)	whiA	3669210..3670151 (-)	942	WP_159784952.1	DNA-binding protein WhiA	-
GNK04_RS19005 (GNK04_19000)	-	3670192..3671160 (-)	969	WP_159784955.1	YvcK family protein	-
GNK04_RS19010 (GNK04_19005)	rapZ	3671162..3672052 (-)	891	WP_159784958.1	RNase adapter RapZ	-
GNK04_RS19015 (GNK04_19010)	-	3672098..3672571 (-)	474	WP_224882158.1	8-oxo-dGTP diphosphatase	-

Sequence

Protein

• Length: 194 a.a.
• Molecular weight: 21420.68 Da
• Isoelectric Point: 4.7890

>NTDB_id=405562 GNK04_RS18990 WP_098445023.1 3667994..3668578(+) (clpP) [Bacillus sp. N1-1]
MVLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGTAIDDNVSNAVVAQLLFLAAEDPDKDISLYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEPGKRYALPNSEVMIHQPLGGTQGQASDIEIHAKRIIQMREKLNKILSERTGQ
PLETIDRDTDRDRFMEATEAKEYGLIDEVMEKKA

Nucleotide

• Length: 585 bp

>NTDB_id=405562 GNK04_RS18990 WP_098445023.1 3667994..3668578(+) (clpP) [Bacillus sp. N1-1]
ATGGTTTTAATTCCAACGGTAATTGAACAAACAAACCGCGGTGAAAGAGCGTACGACATTTATTCTCGTCTTCTTAAGGA
CCGTATTATTATGCTAGGAACAGCAATTGACGACAACGTTTCAAACGCTGTAGTCGCTCAGCTTCTTTTCCTTGCTGCAG
AAGATCCTGATAAAGATATCTCACTTTACATTAACAGCCCTGGTGGTTCGATCACAGCAGGTATGGCGATTTACGATACA
ATGCAATTCATCAAGCCTAAAGTATCAACAATCTGTATCGGTATGGCTGCATCAATGGGTGCCTTCCTTCTTGCAGCAGG
CGAGCCTGGGAAGCGTTACGCGCTACCAAATAGTGAAGTAATGATTCACCAACCGCTCGGTGGTACGCAAGGTCAGGCTT
CTGACATTGAAATTCACGCAAAACGTATCATTCAAATGCGCGAAAAGCTGAACAAAATTCTTTCTGAACGTACAGGTCAA
CCACTTGAAACAATTGATCGCGACACGGATCGTGATCGTTTCATGGAAGCAACAGAAGCGAAAGAATACGGCTTAATTGA
TGAAGTAATGGAAAAGAAAGCATAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (13-192)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	84.737	97.938	0.83
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	66.492	98.454	0.655
clpP	Streptococcus mutans UA159	56.545	98.454	0.557
clpP	Streptococcus pneumoniae D39	55.67	100	0.557
clpP	Streptococcus pneumoniae R6	55.67	100	0.557
clpP	Streptococcus pneumoniae TIGR4	55.67	100	0.557
clpP	Lactococcus lactis subsp. cremoris KW2	55.67	100	0.557
clpP	Streptococcus pneumoniae Rx1	55.67	100	0.557
clpP	Streptococcus thermophilus LMG 18311	56.316	97.938	0.552
clpP	Streptococcus thermophilus LMD-9	56.316	97.938	0.552
clpP	Streptococcus pyogenes JRS4	54.922	99.485	0.546
clpP	Streptococcus pyogenes MGAS315	54.922	99.485	0.546
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	54.124	100	0.541