Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EML4_RS14000 Genome accession   NZ_CP058525
Coordinates   2847773..2849305 (+) Length   510 a.a.
NCBI ID   WP_121592402.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain EML4     
Function   promote branch migration (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2842773..2854305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EML4_RS13975 (EML4_13975) - 2842835..2843800 (+) 966 WP_003503830.1 sugar ABC transporter permease -
  EML4_RS13980 (EML4_13980) ugpE 2843811..2844653 (+) 843 WP_003503828.1 sn-glycerol-3-phosphate ABC transporter permease UgpE -
  EML4_RS13985 (EML4_13985) - 2844664..2845764 (+) 1101 WP_003503827.1 sn-glycerol-3-phosphate import ATP-binding protein UgpC -
  EML4_RS13990 (EML4_13990) - 2845874..2846386 (+) 513 WP_179171770.1 cupin domain-containing protein -
  EML4_RS13995 (EML4_13995) gshB 2846630..2847589 (+) 960 WP_026363806.1 glutathione synthase -
  EML4_RS14000 (EML4_14000) comM 2847773..2849305 (+) 1533 WP_121592402.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EML4_RS14005 (EML4_14005) cysK 2849419..2850387 (-) 969 WP_003503821.1 cysteine synthase A -
  EML4_RS14010 (EML4_14010) - 2850529..2851146 (-) 618 WP_035212607.1 LysE family translocator -
  EML4_RS14015 (EML4_14015) dut 2851290..2851760 (-) 471 WP_060722818.1 dUTP diphosphatase -
  EML4_RS14020 (EML4_14020) - 2851851..2853434 (+) 1584 WP_003503817.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 53423.90 Da        Isoelectric Point: 8.5922

>NTDB_id=405485 EML4_RS14000 WP_121592402.1 2847773..2849305(+) (comM) [Agrobacterium tumefaciens strain EML4]
MVARVNTVAFQGIEGVPVEVQIMVAPGKVGIQIVGLPDKAVAESRERVQAALHASGLALPAKKVTVNLAPADLPKEGSHF
DLPIALGLMAALGAIPADMLGRYVVLGELNLDGTIGTVSGALPAAIGANALGKELICPAESGPEAAWAGASIDILAPRSL
IALANHFRGTQLLARPTPAIRANPVNLPDLADIKGQESARRALEVAAAGGHNLLMVGPPGSGKSMLAARLPSILPPLEVA
ELLEVSMVHSIAGQLSGGKLSDRRPFRTPHHSATMAALIGGGLRAKPGEASLAHHGVLFLDEFPEFSPQVLDALRQPLET
GECIIARANHRVSYPAEIQLVAAMNLCRCGMAGEPGFNCARGQRCVTDYQARISGPLLDRIDIRIDVPAVSAADLIRPVV
AEPSAVVAARVARARLAQQERYAAAGFTAIRTNARCTTTLIEKYAEPDASGLQLLRDAAERLKFSARGYHRILKVARTLA
DLDGKQTVGRIHVAEAVSYRIAGERLTAAA

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=405485 EML4_RS14000 WP_121592402.1 2847773..2849305(+) (comM) [Agrobacterium tumefaciens strain EML4]
ATGGTGGCAAGGGTCAATACGGTTGCATTTCAGGGCATAGAGGGTGTGCCCGTCGAGGTGCAGATCATGGTCGCACCCGG
AAAGGTCGGCATCCAGATTGTCGGCCTGCCAGACAAGGCGGTGGCCGAAAGCCGCGAGAGGGTGCAGGCCGCCCTGCATG
CTTCGGGTCTGGCGCTGCCGGCGAAAAAAGTCACCGTCAATCTCGCGCCTGCGGATTTGCCCAAGGAAGGATCGCATTTT
GATCTTCCCATTGCGCTTGGCCTCATGGCTGCCTTGGGGGCGATACCGGCAGACATGCTGGGACGTTATGTGGTTCTCGG
CGAACTCAATCTTGATGGCACCATCGGTACGGTTTCGGGCGCCCTGCCGGCGGCTATCGGCGCCAATGCACTCGGCAAGG
AGCTGATCTGCCCGGCTGAAAGCGGGCCGGAAGCGGCCTGGGCCGGAGCCAGTATCGATATTCTCGCCCCGCGCAGTCTC
ATTGCACTCGCCAATCATTTTCGCGGCACACAGCTTCTCGCGCGCCCGACGCCCGCCATCCGCGCCAATCCGGTTAATCT
GCCTGATTTAGCTGACATCAAGGGACAGGAGAGTGCCCGGCGCGCGCTGGAGGTGGCCGCCGCTGGCGGCCATAATCTGC
TGATGGTCGGCCCACCCGGTTCGGGTAAATCCATGCTCGCAGCCCGCTTGCCTTCCATCCTGCCCCCGCTGGAAGTGGCG
GAGTTGCTGGAAGTGTCCATGGTCCATTCCATCGCCGGCCAATTGTCGGGTGGCAAGCTGTCGGACCGCAGGCCTTTCCG
CACGCCGCACCATTCCGCCACCATGGCGGCGCTGATCGGCGGAGGGCTGCGTGCCAAACCGGGCGAAGCTTCGCTTGCCC
ATCACGGCGTTCTTTTTCTGGATGAGTTCCCGGAATTTTCGCCGCAGGTGCTGGATGCGCTTCGCCAGCCGCTGGAAACG
GGCGAATGCATCATTGCGCGAGCCAATCACCGCGTCAGCTATCCGGCAGAAATCCAACTCGTTGCGGCCATGAACCTCTG
CAGGTGCGGCATGGCGGGAGAGCCGGGTTTCAACTGCGCCCGAGGCCAGCGCTGTGTAACCGATTATCAGGCCCGCATTT
CCGGACCGTTGCTAGACCGTATCGATATCCGCATCGACGTTCCCGCTGTCTCCGCCGCCGATCTCATTCGCCCCGTGGTG
GCCGAGCCGAGTGCGGTGGTGGCCGCCCGGGTCGCCCGGGCACGCCTTGCGCAGCAGGAACGCTACGCGGCGGCGGGATT
TACCGCCATTCGCACGAATGCTCGCTGCACGACGACCCTGATAGAAAAATATGCCGAGCCGGATGCGTCCGGGCTGCAAT
TGCTGCGCGATGCCGCCGAGCGGCTGAAGTTTTCCGCGCGCGGTTATCATCGCATTCTCAAGGTTGCCCGCACCCTGGCC
GATCTGGATGGCAAGCAGACGGTTGGCCGCATCCATGTGGCGGAAGCTGTGTCCTATCGTATCGCAGGGGAAAGGCTTAC
GGCGGCGGCGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

45.2

98.039

0.443
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.488

99.608

0.443
  comM Vibrio cholerae strain A1552

43.625

98.431

0.429
  comM Vibrio cholerae O1 biovar El Tor strain E7946

43.625

98.431

0.429
  comM Vibrio campbellii strain DS40M4

43.313

98.235

0.425
  comM Glaesserella parasuis strain SC1401

42.914

98.235

0.422
  comM Haemophilus influenzae Rd KW20

42.376

99.02

0.42
  comM Legionella pneumophila str. Paris

40.358

98.627

0.398
  comM Legionella pneumophila strain ERS1305867

40.358

98.627

0.398

Multiple sequence alignment