Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | GM698_RS03725 | Genome accession | NZ_CP046532 |
| Coordinates | 785335..785661 (+) | Length | 108 a.a. |
| NCBI ID | WP_159629038.1 | Uniprot ID | - |
| Organism | Mannheimia sp. ZY171111 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 780335..790661
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GM698_RS03700 (GM698_03660) | rpsL | 780780..781154 (-) | 375 | WP_005708967.1 | 30S ribosomal protein S12 | - |
| GM698_RS03705 (GM698_03665) | rfaC | 781274..782233 (-) | 960 | WP_176807591.1 | lipopolysaccharide heptosyltransferase RfaC | - |
| GM698_RS03710 (GM698_03670) | waaF | 782296..783333 (-) | 1038 | WP_176809590.1 | lipopolysaccharide heptosyltransferase II | - |
| GM698_RS03715 (GM698_03675) | - | 783402..783821 (-) | 420 | WP_176807593.1 | MliC family protein | - |
| GM698_RS03720 (GM698_03680) | - | 783883..785055 (-) | 1173 | WP_176809589.1 | LysM-like peptidoglycan-binding domain-containing protein | - |
| GM698_RS03725 (GM698_03685) | comEA/comE1 | 785335..785661 (+) | 327 | WP_159629038.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| GM698_RS03730 (GM698_03690) | asd | 785823..786719 (+) | 897 | WP_209289674.1 | archaetidylserine decarboxylase | - |
| GM698_RS03735 (GM698_03695) | - | 786779..787582 (-) | 804 | WP_176807595.1 | tyrosine-type recombinase/integrase | - |
| GM698_RS03740 (GM698_03700) | gshAB | 787789..790065 (+) | 2277 | WP_209289675.1 | bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB | - |
Sequence
Protein
Download Length: 108 a.a. Molecular weight: 11757.50 Da Isoelectric Point: 10.0540
>NTDB_id=405178 GM698_RS03725 WP_159629038.1 785335..785661(+) (comEA/comE1) [Mannheimia sp. ZY171111]
MNKMKTLALSLLIGLNTLAFAQKTPQIEQNNTLKAQQSMQKNLSAVNINTASAAELQDKLVGIGEKKAQAIVDYRTQNGN
FKSIEQLTEVSGIGQATLEKNRGNIILE
MNKMKTLALSLLIGLNTLAFAQKTPQIEQNNTLKAQQSMQKNLSAVNINTASAAELQDKLVGIGEKKAQAIVDYRTQNGN
FKSIEQLTEVSGIGQATLEKNRGNIILE
Nucleotide
Download Length: 327 bp
>NTDB_id=405178 GM698_RS03725 WP_159629038.1 785335..785661(+) (comEA/comE1) [Mannheimia sp. ZY171111]
ATGAACAAGATGAAAACTCTCGCACTCAGTCTATTAATCGGCTTAAACACCCTAGCTTTTGCTCAAAAAACACCACAAAT
TGAGCAAAATAATACGCTAAAAGCACAACAAAGTATGCAAAAAAACCTTAGTGCGGTAAATATCAATACAGCGAGTGCAG
CCGAACTGCAAGATAAGCTCGTAGGTATAGGCGAGAAAAAAGCCCAAGCCATTGTGGATTACCGTACCCAAAACGGCAAT
TTCAAAAGTATTGAACAACTTACTGAAGTTTCTGGAATCGGGCAAGCTACCTTAGAGAAAAACCGAGGAAATATCATTTT
AGAATAA
ATGAACAAGATGAAAACTCTCGCACTCAGTCTATTAATCGGCTTAAACACCCTAGCTTTTGCTCAAAAAACACCACAAAT
TGAGCAAAATAATACGCTAAAAGCACAACAAAGTATGCAAAAAAACCTTAGTGCGGTAAATATCAATACAGCGAGTGCAG
CCGAACTGCAAGATAAGCTCGTAGGTATAGGCGAGAAAAAAGCCCAAGCCATTGTGGATTACCGTACCCAAAACGGCAAT
TTCAAAAGTATTGAACAACTTACTGAAGTTTCTGGAATCGGGCAAGCTACCTTAGAGAAAAACCGAGGAAATATCATTTT
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
53.097 |
100 |
0.556 |
| comEA | Vibrio cholerae C6706 |
49.057 |
98.148 |
0.481 |
| comEA | Vibrio cholerae strain A1552 |
49.057 |
98.148 |
0.481 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
64.516 |
57.407 |
0.37 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
62.903 |
57.407 |
0.361 |
| comEA | Legionella pneumophila strain ERS1305867 |
36.792 |
98.148 |
0.361 |
| comEA | Legionella pneumophila str. Paris |
36.792 |
98.148 |
0.361 |