Detailed information NTG0405062

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: GOM46_RS02810
• Genome accession: NZ_CP046525
• Coordinates: 557917..558387 (+)
• Length: 156 a.a.
• NCBI ID: WP_235083952.1
• Uniprot ID: -
• Organism: Streptococcus infantis strain SO
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 552917..563387

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GOM46_RS02780 (GOM46_02765)	-	553211..554080 (+)	870	WP_006150094.1	branched-chain amino acid ABC transporter permease	-
GOM46_RS02785 (GOM46_02770)	-	554084..555040 (+)	957	WP_235083951.1	branched-chain amino acid ABC transporter permease	-
GOM46_RS02790 (GOM46_02775)	-	555040..555804 (+)	765	WP_049509414.1	ABC transporter ATP-binding protein	-
GOM46_RS02795 (GOM46_02780)	-	555804..556514 (+)	711	WP_000062228.1	ABC transporter ATP-binding protein	-
GOM46_RS02800 (GOM46_02785)	-	556830..557486 (+)	657	WP_178895253.1	CBS domain-containing protein	-
GOM46_RS02805 (GOM46_02790)	rpsF	557615..557905 (+)	291	WP_002896497.1	30S ribosomal protein S6	-
GOM46_RS02810 (GOM46_02795)	ssbA	557917..558387 (+)	471	WP_235083952.1	single-stranded DNA-binding protein	Machinery gene
GOM46_RS02815 (GOM46_02800)	rpsR	558420..558659 (+)	240	WP_000068664.1	30S ribosomal protein S18	-
GOM46_RS02820 (GOM46_02805)	-	558872..559381 (+)	510	WP_235083953.1	GNAT family N-acetyltransferase	-
GOM46_RS02825 (GOM46_02810)	-	559462..560862 (+)	1401	WP_235083954.1	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	-
GOM46_RS02830 (GOM46_02815)	-	560864..561226 (+)	363	WP_025169983.1	S1 RNA-binding domain-containing protein	-
GOM46_RS02835 (GOM46_02820)	-	561275..562024 (+)	750	WP_235083955.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
GOM46_RS02840 (GOM46_02825)	-	562014..562298 (+)	285	WP_235083956.1	GIY-YIG nuclease family protein	-
GOM46_RS02845 (GOM46_02830)	-	562383..563318 (+)	936	WP_235083957.1	manganese-dependent inorganic pyrophosphatase	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 17379.18 Da
• Isoelectric Point: 4.9164

>NTDB_id=405062 GOM46_RS02810 WP_235083952.1 557917..558387(+) (ssbA) [Streptococcus infantis strain SO]
MINNVVLVGRMVRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGQTGGTHSAPSSNYSSPTQSAPDFSRDENPFGTTNPLDISDDDLPF

Nucleotide

• Length: 471 bp

>NTDB_id=405062 GOM46_RS02810 WP_235083952.1 557917..558387(+) (ssbA) [Streptococcus infantis strain SO]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGGTACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTAGC
TACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAAGCTGATTTTATCAATGTCGTCATGT
GGCGCCAACAGGCTGAAAACCTTGCTAACTGGGCTAAAAAAGGCTCACTTATTGGGGTGACAGGTCGTATTCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACTGAAGTCGTAGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
CGTACGTGAAGGTCAAACTGGTGGAACTCATTCTGCACCAAGTTCAAACTATTCATCACCTACACAATCAGCACCTGACT
TTTCACGTGATGAAAATCCATTTGGAACAACAAATCCATTGGATATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	54.651	100	0.603
ssb	Latilactobacillus sakei subsp. sakei 23K	54.706	100	0.596
ssbB	Bacillus subtilis subsp. subtilis str. 168	54.717	67.949	0.372
ssbB	Streptococcus sobrinus strain NIDR 6715-7	53.211	69.872	0.372
ssb	Glaesserella parasuis strain SC1401	31.844	100	0.365
ssbB/cilA	Streptococcus pneumoniae TIGR4	52.294	69.872	0.365
ssb	Vibrio cholerae strain A1552	32.571	100	0.365