Detailed information NTG0405019

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: GOM47_RS09330
• Genome accession: NZ_CP046524
• Coordinates: 1885267..1887699 (-)
• Length: 810 a.a.
• NCBI ID: WP_235080633.1
• Uniprot ID: -
• Organism: Streptococcus oralis strain SOT
• Function: degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 1880267..1892699

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GOM47_RS09315 (GOM47_09320)	-	1882314..1882841 (-)	528	WP_235080630.1	isoprenylcysteine carboxyl methyltransferase family protein	-
GOM47_RS09320 (GOM47_09325)	-	1882943..1884298 (-)	1356	WP_235080631.1	sensor histidine kinase	-
GOM47_RS09325 (GOM47_09330)	-	1884295..1884948 (-)	654	WP_235080632.1	response regulator transcription factor	-
GOM47_RS09330 (GOM47_09335)	clpC	1885267..1887699 (-)	2433	WP_235080633.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
GOM47_RS09335 (GOM47_09340)	-	1887701..1888159 (-)	459	WP_235080634.1	CtsR family transcriptional regulator	-
GOM47_RS09340 (GOM47_09345)	-	1888834..1889664 (-)	831	WP_084856435.1	hypothetical protein	-
GOM47_RS09345 (GOM47_09350)	-	1889668..1890819 (-)	1152	WP_414930277.1	phage major capsid protein	-
GOM47_RS09350 (GOM47_09355)	-	1890912..1891058 (-)	147	WP_001003898.1	DUF2292 domain-containing protein	-

Sequence

Protein

• Length: 810 a.a.
• Molecular weight: 90362.17 Da
• Isoelectric Point: 6.0186

>NTDB_id=405019 GOM47_RS09330 WP_235080633.1 1885267..1887699(-) (clpC) [Streptococcus oralis strain SOT]
MNYSKALNECIESAYMVASHFGARYLESWHLLIAMSNHSYSVAGATLNDYPYEMDRLEEVALELTETDYSQDETFTELPF
SHRLEVLFAEAEYVASVVHAKVLGTEHVLYAILHDGNALATRILERAGFSYEDQKDQVRIAALRRNLEERAGWTREDLKA
LRQRHRTVTDKQNSMANMMGMPQAQSGGLEDYTHDLTEQARSGKLEPVIGRDKEISRMIQILSRKTKNNPVLVGDAGVGK
TALALGLAQRIASGDVPAEMAKMRVLELDLMNVVAGTRFRGDFEERMNNIIKDIEEDGKVILFIDELHTIMGSGSGIDST
LDAANILKPALARGTLRTVGATTQEEYQKHIEKDAALSRRFAKVTIEEPSMADSITILQGLKATYEKHHRVRITDEAVET
AVKMAHRYLTSRHLPDSAIDLLDEAAATVQNKSKHVKADESDLSPADKALMDGKWKQAAQLIAKEQEVPVYKDLVTESEI
LTTLSRLSGIPVQKLTQTDAKKYLNLEAELHKRVIGQDQAVSSISRAIRRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK
ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQVLDD
GVLTDSKGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKDIRFDQENMEKRIFEELKKTYRPEFINRIDEKVVFHSLDS
EHMQEIVKIMVKPLVASLAEKGIDLKLQASALKLLASQGYDPEMGARPLRRTLQTEVEDKLAELLLKGELVAGKTLKIGV
KAGQLKFDIA

Nucleotide

• Length: 2433 bp

>NTDB_id=405019 GOM47_RS09330 WP_235080633.1 1885267..1887699(-) (clpC) [Streptococcus oralis strain SOT]
ATGAACTATTCAAAAGCATTGAATGAATGTATCGAAAGTGCCTACATGGTTGCGAGCCATTTTGGAGCTCGTTACCTAGA
GTCATGGCATTTGTTGATTGCCATGTCCAATCACAGTTACAGTGTGGCAGGTGCGACTCTAAATGATTACCCATATGAGA
TGGACCGTTTAGAAGAGGTTGCGTTGGAACTGACTGAAACGGACTATAGCCAAGATGAAACCTTTACGGAATTACCCTTT
TCCCATCGTTTGGAGGTTCTCTTTGCAGAAGCAGAGTATGTAGCCTCAGTGGTCCACGCAAAGGTGCTAGGGACAGAGCA
TGTCCTCTATGCGATTTTGCATGACGGCAATGCCTTGGCAACTCGCATCTTGGAGAGAGCAGGCTTTTCTTATGAAGACC
AGAAAGATCAGGTTAGAATAGCTGCTCTTCGTCGCAATTTAGAGGAACGTGCAGGTTGGACAAGAGAAGATCTCAAGGCT
TTGCGTCAACGTCATCGCACAGTAACTGACAAGCAAAATTCCATGGCCAATATGATGGGCATGCCTCAAGCTCAAAGTGG
CGGTCTAGAGGACTACACGCATGACCTGACGGAGCAAGCGCGCTCTGGCAAGTTAGAGCCAGTTATCGGTCGAGACAAGG
AAATCTCACGTATGATTCAGATTTTGAGTCGAAAGACCAAGAACAATCCAGTCTTGGTTGGAGATGCTGGTGTCGGGAAA
ACAGCTCTAGCACTTGGACTTGCCCAGCGTATTGCTAGTGGGGATGTGCCTGCGGAAATGGCAAAGATGCGTGTTCTAGA
GCTTGATTTGATGAATGTCGTTGCGGGAACACGTTTCCGTGGAGATTTTGAAGAGCGCATGAACAATATCATCAAGGACA
TCGAGGAAGATGGCAAAGTGATCCTCTTTATCGATGAACTCCACACAATCATGGGTTCTGGTAGTGGTATTGATTCGACT
CTGGATGCGGCTAATATTTTGAAACCAGCATTGGCGCGTGGAACTCTGAGAACGGTTGGTGCAACCACTCAGGAAGAATA
CCAAAAACACATCGAAAAAGATGCTGCCCTTTCTCGTCGGTTTGCCAAAGTGACGATTGAAGAGCCTAGTATGGCAGATA
GTATAACCATTTTGCAAGGTTTGAAGGCTACCTATGAGAAACACCACCGTGTGCGAATCACAGATGAAGCTGTCGAAACA
GCTGTTAAGATGGCGCATCGTTACTTGACCAGTCGTCACTTACCAGATTCTGCTATCGACCTTTTAGATGAAGCGGCAGC
AACCGTTCAAAACAAATCCAAGCATGTGAAAGCAGACGAATCTGACTTGAGTCCAGCTGACAAGGCCTTGATGGATGGCA
AGTGGAAACAAGCGGCCCAGCTAATCGCAAAAGAACAAGAAGTGCCTGTCTATAAAGACTTGGTAACAGAATCTGAAATT
TTGACCACCTTGAGCCGCTTGTCAGGTATCCCAGTCCAAAAGCTGACGCAAACAGATGCTAAGAAATACCTTAACCTCGA
AGCAGAACTACATAAACGCGTCATCGGTCAAGATCAAGCTGTTTCAAGTATTAGCCGTGCCATTCGCCGCAACCAGTCAG
GTATTCGCAGTCACAAGCGTCCGATTGGTTCCTTTATGTTCCTAGGGCCGACGGGTGTCGGGAAGACCGAATTGGCAAAG
GCTTTGGCAGAAGTTCTCTTTGATGACGAATCAGCCCTTATCCGCTTTGATATGAGTGAGTATATGGAGAAATTCGCAGC
CAGCCGTCTCAACGGAGCGCCTCCGGGTTATGTGGGCTACGAAGAAGGTGGGGAATTGACAGAGAAGGTCCGCAATAAAC
CTTACTCAGTGCTTCTCTTTGATGAGGTTGAAAAAGCCCACCCAGATATCTTTAATGTCCTCTTGCAAGTCTTGGATGAT
GGAGTTCTAACAGACAGCAAGGGTCGCAAGGTTGACTTTTCAAATACCATTATCATCATGACGTCAAACCTTGGTGCGAC
AGCCCTGCGTGATGACAAGACTGTCGGTTTTGGGGCCAAGGACATTCGTTTTGATCAGGAAAATATGGAAAAACGAATCT
TTGAAGAGTTGAAAAAAACTTATCGACCAGAGTTTATCAACCGTATTGATGAGAAGGTTGTTTTCCATAGTTTGGATAGT
GAACACATGCAGGAAATTGTCAAGATCATGGTTAAACCATTGGTTGCTAGTCTTGCTGAGAAAGGCATCGACTTGAAACT
GCAAGCTTCAGCGTTGAAGTTGCTAGCAAGCCAAGGTTATGATCCAGAAATGGGAGCTCGTCCGCTTCGCAGAACACTAC
AAACAGAAGTGGAAGACAAGTTGGCAGAACTCCTCCTTAAGGGAGAACTGGTAGCAGGCAAGACCCTCAAGATTGGTGTC
AAAGCAGGTCAGTTAAAATTTGATATTGCTTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (718-797)

• AAA lid domain (AAA_lid_9) (371-446)

• AAA domain (Cdc48 subfamily) (AAA_2) (540-711)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (103-133)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (14-49)

• ATPase family associated with various cellular activities (AAA) (AAA) (231-362)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus pneumoniae Rx1	96.667	100	0.967
clpC	Streptococcus pneumoniae D39	96.667	100	0.967
clpC	Streptococcus pneumoniae TIGR4	96.667	100	0.967
clpC	Streptococcus mutans UA159	67.528	100	0.678
clpC	Streptococcus thermophilus LMD-9	67.199	100	0.675
clpC	Streptococcus thermophilus LMG 18311	67.076	100	0.674
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	49.396	100	0.505
clpC	Bacillus subtilis subsp. subtilis str. 168	45.074	100	0.452
clpE	Streptococcus mutans UA159	49.032	76.543	0.375
clpC	Lactococcus lactis subsp. cremoris KW2	46.571	77.407	0.36