Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B18_RS09360 Genome accession   NZ_CP058332
Coordinates   2023073..2024566 (-) Length   497 a.a.
NCBI ID   WP_023110533.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain B18     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2018073..2029566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B18_RS09345 (B18_09330) - 2018803..2019720 (+) 918 WP_003098255.1 LysR substrate-binding domain-containing protein -
  B18_RS09350 (B18_09335) pchP 2019871..2020920 (+) 1050 WP_003110458.1 phosphorylcholine phosphatase -
  B18_RS09355 (B18_09340) betT 2020963..2022948 (-) 1986 WP_003096496.1 choline BCCT transporter BetT -
  B18_RS09360 (B18_09345) comM 2023073..2024566 (-) 1494 WP_023110533.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B18_RS09365 (B18_09350) - 2024607..2024867 (-) 261 WP_003096478.1 accessory factor UbiK family protein -
  B18_RS09370 (B18_09355) glnK 2025307..2025645 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  B18_RS09375 (B18_09360) - 2025685..2027013 (+) 1329 WP_003109815.1 ammonium transporter -
  B18_RS09380 (B18_09365) - 2027274..2027699 (+) 426 WP_003096441.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  B18_RS09385 (B18_09370) sutA 2027777..2028094 (+) 318 WP_003098240.1 transcriptional regulator SutA -
  B18_RS09390 (B18_09375) - 2028518..2029432 (+) 915 WP_003163071.1 fimbrial protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53055.02 Da        Isoelectric Point: 7.9584

>NTDB_id=405019 B18_RS09360 WP_023110533.1 2023073..2024566(-) (comM) [Pseudomonas aeruginosa strain B18]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLPPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLKHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEVSERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRAMTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=405019 B18_RS09360 WP_023110533.1 2023073..2024566(-) (comM) [Pseudomonas aeruginosa strain B18]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTACCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT
CGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCCGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAAGCCCTGGAGGTCGCGGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAAGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCACGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGTGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGGTCAGCGAACGGGTGGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGATCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAATGACCTCCACGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.186

100

0.567
  comM Vibrio campbellii strain DS40M4

56.74

100

0.567
  comM Vibrio cholerae O1 biovar El Tor strain E7946

56.338

100

0.563
  comM Vibrio cholerae strain A1552

56.338

100

0.563
  comM Glaesserella parasuis strain SC1401

55.179

100

0.557
  comM Acinetobacter baylyi ADP1

53.707

100

0.539
  comM Legionella pneumophila str. Paris

49.9

100

0.501
  comM Legionella pneumophila strain ERS1305867

49.9

100

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.866

100

0.469
  comM Helicobacter pylori 26695

38.845

100

0.392

Multiple sequence alignment