Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   GOM47_RS01410 Genome accession   NZ_CP046524
Coordinates   257130..259109 (+) Length   659 a.a.
NCBI ID   WP_235080835.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 252130..264109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS01380 (GOM47_01375) - 252547..252777 (+) 231 WP_002892633.1 DUF1146 family protein -
  GOM47_RS01385 (GOM47_01380) murA 252801..254084 (+) 1284 WP_235080832.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  GOM47_RS01390 (GOM47_01385) - 254071..254265 (+) 195 WP_061415718.1 DNA-directed RNA polymerase subunit beta -
  GOM47_RS01395 (GOM47_01390) endA 254306..255130 (+) 825 WP_235080833.1 DNA/RNA non-specific endonuclease Machinery gene
  GOM47_RS01400 (GOM47_01395) - 255271..256602 (+) 1332 WP_235080834.1 hemolysin family protein -
  GOM47_RS01410 (GOM47_01405) amiA 257130..259109 (+) 1980 WP_235080835.1 peptide ABC transporter substrate-binding protein Regulator
  GOM47_RS01415 (GOM47_01410) amiC 259176..260672 (+) 1497 WP_093585951.1 ABC transporter permease Regulator
  GOM47_RS01420 (GOM47_01415) amiD 260672..261598 (+) 927 WP_125450037.1 oligopeptide ABC transporter permease OppC Regulator
  GOM47_RS01425 (GOM47_01420) amiE 261607..262674 (+) 1068 WP_235080836.1 ABC transporter ATP-binding protein Regulator
  GOM47_RS01430 (GOM47_01425) amiF 262685..263614 (+) 930 WP_001291316.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73038.30 Da        Isoelectric Point: 4.8780

>NTDB_id=404974 GOM47_RS01410 WP_235080835.1 257130..259109(+) (amiA) [Streptococcus oralis strain SOT]
MKKSRVFVTAGIALLATGVLAACGSSKSSDSTAPKNYGYVYTADPETLDYLISGKQSTKIATSNGIDGLFTNDKYGNLTP
AVAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVTAKDFVNGLKHAADKKSEALYLAETSVKGLSDYLSGNSKDFSTV
GVKAVDDYTLEYTLNKPEPYWNSKMAYSIFWPLNEEFEKSKGSDFAKATDPTSLLYNGPFLLKGLTTKSSIEFAKNEQYW
DKDNVHLDKVTLAFYDGSDQESIERNFTSGAYSYARLYPTSSNYSKVEETYKENIFYTPSGPGIAGLGVNIDRQGYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTSYSAQINGKEGAPLAVRNLFVKPGFVSAGEKTFGDLVTDKMATYGDEWKN
VNFADGQDGLFNADKAKAEFAKAKTALETEGVKFPIHLDVPVDQTSKNYIARIQSFKQSVEKVLGEDNVVIDIQQVSKDE
LNNITYYAANAAAEDWDLSGAVGWIPDYEDPSTYLDILKTTNAEQTKTYMGYEGADNAAAAQVGLKEYDKLVDEAAKETS
DLNVRYEKYAAAQAWLTDSSLFLPAMSSSGAAPFISRVVPFTASYSQSGDKGSDVYFKYIQLQDKVVTKVDYEQAREKWL
KEKKESNEKVQKELANHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=404974 GOM47_RS01410 WP_235080835.1 257130..259109(+) (amiA) [Streptococcus oralis strain SOT]
ATGAAAAAAAGTAGAGTATTTGTTACAGCAGGGATTGCTTTGCTGGCAACTGGCGTTCTCGCTGCTTGCGGTTCTTCAAA
ATCATCTGATTCAACAGCACCAAAAAATTATGGTTATGTTTATACAGCTGATCCGGAAACATTGGATTACCTCATTTCAG
GGAAACAAAGTACTAAGATTGCCACTTCAAATGGTATTGACGGTCTCTTCACAAATGACAAATATGGGAATTTGACTCCC
GCAGTTGCAGAAGATTGGTCAGTCTCAAAAGATGGTTTGACTTATACCTACAAAATCCGCAAAGGTGTTAAATGGATGAC
ATCTGATGGGGAAGAGTACGCTGAAGTAACAGCTAAAGATTTCGTAAATGGTTTGAAACACGCAGCAGATAAGAAATCCG
AAGCTCTATATCTAGCAGAAACTTCTGTTAAAGGATTGTCTGATTATTTGTCTGGAAATTCAAAAGACTTTTCTACGGTA
GGTGTGAAGGCAGTTGATGATTATACTCTTGAATACACTTTGAACAAACCCGAACCATACTGGAACTCTAAGATGGCCTA
CTCAATCTTCTGGCCATTGAACGAAGAATTTGAAAAATCAAAAGGATCAGATTTTGCCAAAGCAACAGATCCTACGTCAT
TGCTTTATAATGGTCCGTTCTTGCTGAAAGGTTTGACTACTAAATCTTCTATCGAATTTGCTAAGAATGAGCAGTACTGG
GATAAGGATAACGTTCACCTTGATAAAGTTACCCTTGCTTTCTATGATGGTTCAGACCAAGAGTCCATTGAGCGTAACTT
TACAAGTGGAGCCTATAGCTATGCTCGCCTTTACCCAACAAGTTCAAACTATTCTAAAGTAGAAGAGACATACAAGGAAA
ATATCTTCTACACTCCATCAGGACCAGGGATTGCTGGTTTGGGTGTGAATATTGACCGTCAAGGTTACAAATACACTTCT
AAGACAACTGATGAAGAGAAGACTTCTACTAAGAAAGCCCTTCTTAACAAAGACTTCCGTCAGGCCTTGAACTTTGCCTT
TGACCGTACTTCTTACTCAGCACAAATCAATGGTAAGGAAGGGGCCCCCCTTGCAGTTCGTAACCTCTTTGTGAAACCAG
GGTTTGTCTCTGCAGGTGAAAAAACTTTCGGTGACTTGGTAACTGATAAGATGGCTACTTACGGTGATGAATGGAAGAAC
GTAAACTTTGCTGATGGTCAAGACGGTCTCTTCAATGCTGATAAAGCCAAGGCTGAATTTGCCAAAGCTAAAACTGCATT
GGAAACAGAAGGCGTGAAATTCCCTATTCACTTGGATGTTCCAGTAGACCAAACATCTAAAAATTATATCGCTCGTATTC
AATCCTTTAAACAATCAGTTGAAAAAGTACTTGGTGAAGATAATGTAGTGATTGATATCCAACAAGTTTCTAAAGATGAG
TTGAACAACATCACTTACTATGCTGCAAACGCTGCGGCAGAAGATTGGGACCTCTCAGGAGCAGTTGGATGGATCCCTGA
CTATGAAGATCCATCAACTTACCTTGATATCTTAAAAACAACGAATGCTGAACAAACAAAAACATACATGGGTTATGAAG
GTGCAGATAATGCTGCAGCAGCTCAAGTTGGTTTGAAAGAATACGATAAGCTAGTTGATGAAGCTGCTAAAGAAACAAGC
GATTTGAATGTTCGTTATGAAAAATACGCGGCTGCTCAAGCTTGGTTGACAGATAGCTCACTCTTCTTGCCAGCTATGTC
ATCAAGTGGTGCTGCACCATTCATTTCTCGTGTTGTACCATTCACAGCATCATACAGCCAGTCTGGAGATAAGGGCTCAG
ATGTATACTTCAAGTATATTCAGTTACAAGACAAGGTTGTAACAAAAGTTGACTATGAACAGGCTCGTGAAAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGGCTAATCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

67.527

100

0.675
  amiA3 Streptococcus thermophilus LMD-9

67.121

100

0.672
  amiA3 Streptococcus thermophilus LMG 18311

66.97

100

0.671

Multiple sequence alignment