Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   GOM47_RS01415 Genome accession   NZ_CP046524
Coordinates   259176..260672 (+) Length   498 a.a.
NCBI ID   WP_093585951.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 254176..265672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS01395 (GOM47_01390) endA 254306..255130 (+) 825 WP_235080833.1 DNA/RNA non-specific endonuclease Machinery gene
  GOM47_RS01400 (GOM47_01395) - 255271..256602 (+) 1332 WP_235080834.1 hemolysin family protein -
  GOM47_RS01410 (GOM47_01405) amiA 257130..259109 (+) 1980 WP_235080835.1 peptide ABC transporter substrate-binding protein Regulator
  GOM47_RS01415 (GOM47_01410) amiC 259176..260672 (+) 1497 WP_093585951.1 ABC transporter permease Regulator
  GOM47_RS01420 (GOM47_01415) amiD 260672..261598 (+) 927 WP_125450037.1 oligopeptide ABC transporter permease OppC Regulator
  GOM47_RS01425 (GOM47_01420) amiE 261607..262674 (+) 1068 WP_235080836.1 ABC transporter ATP-binding protein Regulator
  GOM47_RS01430 (GOM47_01425) amiF 262685..263614 (+) 930 WP_001291316.1 ATP-binding cassette domain-containing protein Regulator
  GOM47_RS01435 (GOM47_01430) - 263702..265141 (-) 1440 WP_235080837.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55706.07 Da        Isoelectric Point: 9.1164

>NTDB_id=404975 GOM47_RS01415 WP_093585951.1 259176..260672(+) (amiC) [Streptococcus oralis strain SOT]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTPDKRDNYENTVYERMGYIEYYDTKELQEKAS
TMDSSVTVDANDTNKAIYEKYINQLGNGWTLGVFSESGQFYATREIPIFERVFKFYSNLLDIDHTNKIQDPENPNLERYL
RFENDPAIGWSLVGSGTKHKYLLYFNNQFPFVHQNFVNINLGDSYPTYANTPVLQVITQGQGQTKTSEVQFPTGKKTSSV
DIYSRTYKSPSQADAREVANYGKDDPYTATESNYQYPSMIASSAVAGLIGLIISYAIAIPLGSAMARHKNTWIDSFSTGA
LTFLLALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLFVGD
IWMTMLDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=404975 GOM47_RS01415 WP_093585951.1 259176..260672(+) (amiC) [Streptococcus oralis strain SOT]
ATGAAGAAATATATTTTTATGCGTGTATTGCGTTCATTGGTGTCTATCTTCTTGGTGACAACCTTGACCTACACGATTAT
CTATACGATGGTTCCTCGAAAACTGATTTTCAAGCAGGATACCAACTATAACAAAATTGCAACGACGCCAGATAAACGGG
ATAATTATGAAAATACCGTTTATGAGCGGATGGGCTATATAGAGTACTACGATACTAAGGAGTTGCAAGAAAAAGCGAGC
ACAATGGACTCATCTGTAACAGTAGATGCCAATGATACAAATAAGGCAATCTACGAAAAATACATCAACCAACTCGGTAA
TGGTTGGACACTCGGTGTATTCTCAGAAAGTGGTCAATTCTACGCTACGCGTGAAATTCCAATTTTTGAACGTGTTTTCA
AATTCTACTCGAACTTGCTCGACATTGATCATACAAACAAGATTCAAGACCCTGAAAATCCAAACTTGGAACGTTATCTT
CGTTTTGAAAATGACCCTGCTATAGGTTGGTCATTGGTTGGTTCAGGTACAAAACATAAATACCTTTTGTATTTCAATAA
TCAATTTCCATTTGTACACCAAAACTTTGTGAACATTAACTTGGGAGACTCTTACCCAACTTATGCAAACACACCAGTGC
TTCAAGTTATCACACAGGGTCAGGGACAAACCAAGACATCAGAAGTTCAATTCCCTACGGGTAAAAAGACTTCCTCTGTA
GATATTTACTCTCGTACCTACAAGTCACCAAGTCAAGCAGATGCGCGTGAGGTAGCTAACTATGGTAAAGACGATCCATA
TACAGCTACAGAAAGCAATTATCAATATCCATCAATGATTGCAAGCTCGGCTGTTGCTGGTTTGATCGGTTTGATTATTT
CTTATGCTATCGCAATTCCTCTTGGATCTGCTATGGCTCGCCACAAGAATACTTGGATTGATAGTTTCTCTACAGGTGCT
CTAACCTTCTTGCTTGCCCTTCCAACGATCGCTTTGGTTTACATCGTGCGCTTGATTGGATCATCTATTGGTCTGCCAGA
CTCATTCCCTATCTTGGGTGCTGGGGATTGGCGTTCCTATGTCTTGCCTGCAGTCATTCTAGGTTTGTTGGGAGCGCCAA
GTACAGCTATCTGGATTCGTCGTTATATGATTGACTTGCAATCTCAAGATTTCGTTCGATTTGCTCGTGCAAAAGGACTG
TCTGAAAAAGAAATTTCAAATAAACACATCTTTAAAAATGCCATGGTTCCTTTGGTTTCAGGTATTCCTGGTGCCGTAAT
CGGAGTTATTGGTGGTGCAACATTGACAGAAACCGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATCGACTCTGTTA
AGGCATCAAACAACTCAATGGTAGTTGGTCTCGTCTTCATCTTCACATGTATTTCTATCTTCTCACTCTTTGTAGGAGAT
ATCTGGATGACCATGCTTGATCCACGTATTAAATTGACAGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.908

100

0.769
  amiC Streptococcus thermophilus LMG 18311

76.305

100

0.763
  amiC Streptococcus thermophilus LMD-9

76.104

100

0.761

Multiple sequence alignment