Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   GOM47_RS01430 Genome accession   NZ_CP046524
Coordinates   262685..263614 (+) Length   309 a.a.
NCBI ID   WP_001291316.1    Uniprot ID   A0A3R9S6I9
Organism   Streptococcus oralis strain SOT     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 257685..268614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS01415 (GOM47_01410) amiC 259176..260672 (+) 1497 WP_093585951.1 ABC transporter permease Regulator
  GOM47_RS01420 (GOM47_01415) amiD 260672..261598 (+) 927 WP_125450037.1 oligopeptide ABC transporter permease OppC Regulator
  GOM47_RS01425 (GOM47_01420) amiE 261607..262674 (+) 1068 WP_235080836.1 ABC transporter ATP-binding protein Regulator
  GOM47_RS01430 (GOM47_01425) amiF 262685..263614 (+) 930 WP_001291316.1 ATP-binding cassette domain-containing protein Regulator
  GOM47_RS01435 (GOM47_01430) - 263702..265141 (-) 1440 WP_235080837.1 TrkH family potassium uptake protein -
  GOM47_RS01440 (GOM47_01435) trkA 265145..266494 (-) 1350 WP_235080838.1 Trk system potassium transporter TrkA -
  GOM47_RS01445 (GOM47_01440) - 266895..267398 (+) 504 WP_235080839.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  GOM47_RS01450 (GOM47_01445) - 267811..268374 (+) 564 WP_235080840.1 ECF transporter S component -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35044.24 Da        Isoelectric Point: 6.9903

>NTDB_id=404978 GOM47_RS01430 WP_001291316.1 262685..263614(+) (amiF) [Streptococcus oralis strain SOT]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGEIIFDGQKINGKKSHK
ESSDLIRRIQMIFQDPAASLNERATVDYIISEGLYNYHLFKDEEDRKEKVQKMIHEVGLLKEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAEVARYKEALKK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=404978 GOM47_RS01430 WP_001291316.1 262685..263614(+) (amiF) [Streptococcus oralis strain SOT]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTGGCGGTTAAAAA
CGCCAACTTCTTTATCAACAAGGGAGAAACTTTCTCTCTTGTAGGTGAGTCTGGTAGTGGGAAAACAACGATTGGTCGTG
CCATTATTGGTTTAAATAATACCAGTAAAGGAGAGATTATCTTTGATGGCCAGAAAATTAATGGGAAAAAATCTCATAAG
GAATCCTCAGACTTGATTCGTCGTATCCAGATGATTTTCCAGGACCCTGCAGCCAGCTTGAATGAGCGTGCGACAGTTGA
CTATATCATCTCTGAAGGTCTTTACAACTACCACTTGTTCAAAGACGAAGAAGATCGAAAAGAAAAAGTTCAAAAGATGA
TTCATGAAGTTGGACTTTTGAAAGAACACTTGACCCGTTATCCACACGAGTTTTCTGGTGGTCAACGTCAGCGTATCGGG
ATTGCCCGTGCCCTTGTGATGGAGCCTGATTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTATCAGTGCGTGC
GCAAGTTTTGAACTTGCTCAAGAAGTTCCAAAAAGAGTTGGGCTTGACTTATCTCTTTATCGCGCATGACTTGTCAGTTG
TTCGCTTTATCTCAGATCGTATCGCGGTTATCTATAAGGGAGTTATCGTCGAAGTGGCGGAGACAGAGGAGTTGTTTAAC
AATCCTGTCCACCCATATACTCAGGCGCTTCTATCTGCTGTACCGATTCCAGATCCAATCTTGGAACGCAAGAAGGTCTT
GAAAGTTTACGATCCTGACCAACATGACTATGAGACAGACAAACCATCTATGGTGGAAATTCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCAGAAGTTGCTCGTTACAAAGAAGCTCTTAAAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9S6I9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

85.113

100

0.851
  amiF Streptococcus thermophilus LMG 18311

84.142

100

0.841
  amiF Streptococcus thermophilus LMD-9

83.819

100

0.838

Multiple sequence alignment