Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   GOM47_RS01420 Genome accession   NZ_CP046524
Coordinates   260672..261598 (+) Length   308 a.a.
NCBI ID   WP_125450037.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 255672..266598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS01410 (GOM47_01405) amiA 257130..259109 (+) 1980 WP_235080835.1 peptide ABC transporter substrate-binding protein Regulator
  GOM47_RS01415 (GOM47_01410) amiC 259176..260672 (+) 1497 WP_093585951.1 ABC transporter permease Regulator
  GOM47_RS01420 (GOM47_01415) amiD 260672..261598 (+) 927 WP_125450037.1 oligopeptide ABC transporter permease OppC Regulator
  GOM47_RS01425 (GOM47_01420) amiE 261607..262674 (+) 1068 WP_235080836.1 ABC transporter ATP-binding protein Regulator
  GOM47_RS01430 (GOM47_01425) amiF 262685..263614 (+) 930 WP_001291316.1 ATP-binding cassette domain-containing protein Regulator
  GOM47_RS01435 (GOM47_01430) - 263702..265141 (-) 1440 WP_235080837.1 TrkH family potassium uptake protein -
  GOM47_RS01440 (GOM47_01435) trkA 265145..266494 (-) 1350 WP_235080838.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34574.68 Da        Isoelectric Point: 9.6863

>NTDB_id=404976 GOM47_RS01420 WP_125450037.1 260672..261598(+) (amiD) [Streptococcus oralis strain SOT]
MSTIGKEKFQFVKRDDFASETIDAPAYSYWGSVFRQFLKKKSTVVMLGILVAIILMSFIYPMFSKFDFNDVSKVNDFSAR
FIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINLVIGVIVGGIWGISKSVDRVMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYMIRIQIMRYRDLEYNLASQTLGTPTFKIIVKNIMPQLVSVIVSTMTLMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=404976 GOM47_RS01420 WP_125450037.1 260672..261598(+) (amiD) [Streptococcus oralis strain SOT]
ATGTCAACAATCGGAAAAGAAAAATTTCAGTTCGTAAAACGTGACGATTTTGCCTCTGAAACAATTGACGCCCCTGCCTA
TTCATACTGGGGTTCTGTATTTAGACAGTTTCTAAAGAAAAAATCAACAGTCGTTATGTTGGGGATTTTGGTAGCCATTA
TCCTGATGAGCTTTATTTACCCAATGTTCTCAAAGTTTGACTTTAACGATGTGAGCAAGGTCAATGACTTTTCTGCTCGT
TTTATCAAACCAAACGCTGAACATTGGTTTGGTACAGACAGCAATGGTAAATCCTTGTTTGACGGGGTTTGGTTTGGGGC
GCGTAACTCGATCCTCATCTCTGTCATTGCCACTTTTATCAACCTTGTGATTGGGGTTATTGTTGGTGGAATTTGGGGAA
TTTCAAAATCTGTTGACCGCGTCATGATGGAAGTTTATAACATTATTTCAAACATTCCATCTCTCTTGATTGTCATCGTA
TTGACTTACTCGATTGGTGCTGGTTTCTGGAATTTGATTTTTGCCATGAGTGTGACAACTTGGATTGGGATTGCCTATAT
GATTCGTATCCAAATCATGCGTTATCGTGACTTGGAATACAACCTTGCTTCTCAAACATTGGGGACACCAACCTTTAAAA
TCATCGTTAAAAACATCATGCCACAATTGGTATCCGTTATTGTTTCTACGATGACCTTGATGTTGCCAAGCTTCATCTCT
TATGAAGCCTTCCTTTCCTTCTTTGGACTTGGCTTGCCTGTAACAGTACCAAGTTTGGGACGTTTGATCTCAGATTACTC
ACAAAACGTTACGACCAACGCTTACTTGTTCTGGATTCCGTTGACAACCTTGATTTTGGTATCCTTATCTCTTTTCGTTG
TTGGTCAAAACCTAGCGGACGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.766

100

0.838
  amiD Streptococcus thermophilus LMG 18311

82.143

100

0.821
  amiD Streptococcus thermophilus LMD-9

82.143

100

0.821

Multiple sequence alignment