Detailed information NTG0404928

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: GOM48_RS06925
• Genome accession: NZ_CP046523
• Coordinates: 1373778..1374368 (-)
• Length: 196 a.a.
• NCBI ID: WP_000613467.1
• Uniprot ID: A0AAX0N3L0
• Organism: Streptococcus oralis strain SOD
• Function: degradation of ComX; degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 1368778..1379368

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GOM48_RS06900 (GOM48_06895)	-	1369468..1370232 (-)	765	WP_235096598.1	ABC transporter ATP-binding protein	-
GOM48_RS06905 (GOM48_06900)	-	1370232..1371188 (-)	957	WP_235096599.1	branched-chain amino acid ABC transporter permease	-
GOM48_RS06910 (GOM48_06905)	-	1371192..1372061 (-)	870	WP_235096600.1	branched-chain amino acid ABC transporter permease	-
GOM48_RS06915 (GOM48_06910)	-	1372181..1373341 (-)	1161	WP_235096601.1	ABC transporter substrate-binding protein	-
GOM48_RS06920 (GOM48_06915)	-	1373429..1373698 (-)	270	WP_093586633.1	YlbG family protein	-
GOM48_RS06925 (GOM48_06920)	clpP	1373778..1374368 (-)	591	WP_000613467.1	ATP-dependent Clp protease proteolytic subunit ClpP	Regulator
GOM48_RS06930 (GOM48_06925)	upp	1374547..1375176 (-)	630	WP_025169005.1	uracil phosphoribosyltransferase	-
GOM48_RS06935 (GOM48_06930)	-	1375265..1375732 (-)	468	WP_235096602.1	deoxycytidylate deaminase	-
GOM48_RS06940 (GOM48_06935)	-	1375751..1376308 (-)	558	WP_084946898.1	TetR/AcrR family transcriptional regulator	-
GOM48_RS06945 (GOM48_06940)	-	1376433..1377278 (+)	846	WP_235096603.1	DegV family protein	-
GOM48_RS06950 (GOM48_06945)	-	1377336..1378517 (+)	1182	WP_321159597.1	NAD(P)/FAD-dependent oxidoreductase	-
GOM48_RS06955 (GOM48_06950)	-	1378531..1379052 (+)	522	WP_235096605.1	DUF1697 domain-containing protein	-

Sequence

Protein

• Length: 196 a.a.
• Molecular weight: 21362.37 Da
• Isoelectric Point: 4.4829

>NTDB_id=404928 GOM48_RS06925 WP_000613467.1 1373778..1374368(-) (clpP) [Streptococcus oralis strain SOD]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEQILADNSGK
SVEQIHADAERDYWMSAQETLEYGFIDEIMANNSLS

Nucleotide

• Length: 591 bp

>NTDB_id=404928 GOM48_RS06925 WP_000613467.1 1373778..1374368(-) (clpP) [Streptococcus oralis strain SOD]
ATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGAGAACGTTCCTATGACATTTACTCTCGTCTTCTGAAAGACCGCAT
CATCATGCTAACTGGGCCAGTCGAAGATAATATGGCCAACTCAGTTATTGCCCAGTTGCTCTTCTTGGATGCCCAAGACA
GCACAAAAGATATTTACCTTTATGTCAACACACCTGGAGGTTCTGTTTCGGCTGGTTTGGCAATCGTTGATACCATGAAC
TTTATCAAGGCAGATGTCCAAACAATCGTTATGGGAATGGCTGCATCCATGGGGACTGTCATTGCATCAAGTGGCGCAAA
AGGCAAACGTTTCATGCTTCCAAATGCGGAGTACATGATTCACCAACCAATGGGTGGTACAGGTGGTGGTACCCAACAAA
CAGATATGGCAATCGCTGCAGAACACTTGCTCAAAACTCGTAAGACTTTGGAGCAAATCCTTGCAGATAACTCAGGTAAA
TCAGTTGAGCAAATTCATGCAGATGCAGAACGTGATTACTGGATGAGTGCCCAAGAAACGCTCGAATATGGCTTCATTGA
TGAAATCATGGCTAACAATTCTTTGAGCTAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (11-192)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Streptococcus pneumoniae Rx1	95.408	100	0.954
clpP	Streptococcus pneumoniae R6	95.408	100	0.954
clpP	Streptococcus pneumoniae TIGR4	95.408	100	0.954
clpP	Streptococcus pneumoniae D39	95.408	100	0.954
clpP	Streptococcus pyogenes JRS4	92.308	99.49	0.918
clpP	Streptococcus pyogenes MGAS315	92.308	99.49	0.918
clpP	Streptococcus thermophilus LMD-9	91.282	99.49	0.908
clpP	Streptococcus thermophilus LMG 18311	91.282	99.49	0.908
clpP	Streptococcus mutans UA159	88.718	99.49	0.883
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	87.692	99.49	0.872
clpP	Lactococcus lactis subsp. cremoris KW2	87.179	99.49	0.867
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.031	98.469	0.571
clpP	Bacillus subtilis subsp. subtilis str. 168	57.292	97.959	0.561