Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VY92_RS00205 Genome accession   NZ_CP058307
Coordinates   42248..43348 (+) Length   366 a.a.
NCBI ID   WP_035687998.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AVPG2015     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 37248..48348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VY92_RS00180 (VY92_000180) mog 37984..38562 (+) 579 WP_035688005.1 molybdopterin adenylyltransferase -
  VY92_RS00185 (VY92_000185) glnB 38591..38929 (+) 339 WP_017805299.1 nitrogen regulatory protein P-II -
  VY92_RS00190 (VY92_000190) - 38932..39984 (+) 1053 WP_035688003.1 AI-2E family transporter -
  VY92_RS00195 (VY92_000195) - 40358..41527 (+) 1170 WP_035688001.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  VY92_RS00200 (VY92_000200) pilF/pilF2 41561..42103 (+) 543 WP_017805302.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  VY92_RS00205 (VY92_000205) dprA 42248..43348 (+) 1101 WP_035687998.1 DNA-processing protein DprA Machinery gene
  VY92_RS00210 (VY92_000210) rsmD 43345..43953 (-) 609 WP_046097259.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  VY92_RS00215 (VY92_000215) pilA 44109..45527 (+) 1419 WP_035687996.1 signal recognition particle-docking protein FtsY Machinery gene
  VY92_RS00220 (VY92_000220) glpQ 46086..47180 (-) 1095 WP_035687993.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 40877.67 Da        Isoelectric Point: 4.8599

>NTDB_id=404663 VY92_RS00205 WP_035687998.1 42248..43348(+) (dprA) [Avibacterium paragallinarum strain AVPG2015]
MITNEMLLRLLQIPKLGANTIQKILGEISLTQLLDYDEYAFKQIGWSEKQIQRWFYPERKFIDPALQWAESAGNFLLNFT
DEDYPYLLKQIPSAPPILFLQGNLTALSQPQIAIVGSRYCSNYGEYWAKYFASELSLAGFAITSGLALGIDGFCHQAVVD
IQGQTLAVLGSGLDKVYPAKHRRLAEQIIEHNGTLISEFLPAQAPVAENFPRRNRIISGLSLGTLIIEATERSGSLITAR
YALEQNREIFALPGNIQNGFSEGCHKLIKQGATLVESVTDILENLPHYQYVTPNYTEQKSPSSANEQLTSEPPSYPELYA
QLSHIPISLDELSARLSLPIDVLLTQLLSLELQQLAVCENGLYRRS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=404663 VY92_RS00205 WP_035687998.1 42248..43348(+) (dprA) [Avibacterium paragallinarum strain AVPG2015]
ATGATAACCAATGAGATGTTACTCCGTTTGCTCCAAATTCCTAAACTTGGAGCAAATACCATTCAAAAAATATTGGGTGA
AATTAGTCTTACACAGCTTTTAGATTATGATGAATACGCGTTTAAACAGATTGGTTGGTCAGAAAAGCAAATTCAACGTT
GGTTTTACCCAGAACGAAAATTCATTGATCCTGCGTTACAATGGGCAGAAAGTGCGGGTAATTTTTTGCTTAATTTTACC
GATGAAGATTACCCTTATTTGCTGAAGCAAATTCCCTCCGCCCCGCCGATTTTATTTTTGCAAGGAAATTTGACCGCACT
TTCTCAACCACAAATTGCAATAGTAGGTAGCCGTTATTGCTCGAATTATGGGGAATATTGGGCGAAGTATTTTGCTTCAG
AGTTGAGTCTTGCGGGCTTTGCGATAACCAGTGGACTAGCTTTAGGGATCGACGGATTTTGTCATCAAGCCGTGGTGGAT
ATTCAAGGGCAAACGCTGGCGGTGCTTGGAAGTGGGTTGGATAAGGTGTATCCTGCAAAACATCGCCGTTTGGCTGAGCA
AATTATTGAGCATAACGGCACATTGATTTCCGAATTTCTCCCCGCGCAAGCGCCCGTTGCGGAGAATTTCCCACGCCGAA
ACCGTATTATTAGCGGGCTTTCGCTTGGCACGCTAATTATTGAAGCCACCGAGCGGAGCGGTTCACTCATTACGGCTCGT
TATGCGTTGGAGCAAAACCGTGAGATCTTTGCCTTGCCGGGCAATATTCAAAATGGCTTTAGTGAGGGCTGTCATAAGCT
CATCAAACAAGGGGCGACATTAGTGGAGAGCGTGACGGATATTTTAGAAAATCTCCCACATTATCAGTATGTTACACCGA
ATTATACCGAACAGAAATCGCCATCGTCGGCGAACGAGCAGCTAACTTCAGAGCCACCAAGTTATCCCGAACTTTACGCT
CAATTAAGCCACATTCCCATTAGCCTTGATGAACTTTCAGCCCGTTTGTCATTGCCGATTGATGTCTTATTAACCCAATT
ATTAAGTTTAGAATTGCAACAATTAGCGGTTTGTGAAAATGGGCTGTATCGGCGAAGTTAG

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(312-357)

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Haemophilus influenzae Rd KW20

62.973

100

0.637
  dprA Glaesserella parasuis strain SC1401

57.02

95.355

0.544
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

43.443

100

0.434
  dprA Vibrio cholerae strain A1552

43.443

100

0.434
  dprA Vibrio campbellii strain DS40M4

42.061

98.087

0.413
  dprA Legionella pneumophila strain ERS1305867

40.437

100

0.404

Multiple sequence alignment