Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   VY92_RS00200 Genome accession   NZ_CP058307
Coordinates   41561..42103 (+) Length   180 a.a.
NCBI ID   WP_017805302.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AVPG2015     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 36561..47103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VY92_RS00175 (VY92_000175) - 37037..37966 (+) 930 WP_035688007.1 phosphatidate cytidylyltransferase -
  VY92_RS00180 (VY92_000180) mog 37984..38562 (+) 579 WP_035688005.1 molybdopterin adenylyltransferase -
  VY92_RS00185 (VY92_000185) glnB 38591..38929 (+) 339 WP_017805299.1 nitrogen regulatory protein P-II -
  VY92_RS00190 (VY92_000190) - 38932..39984 (+) 1053 WP_035688003.1 AI-2E family transporter -
  VY92_RS00195 (VY92_000195) - 40358..41527 (+) 1170 WP_035688001.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  VY92_RS00200 (VY92_000200) pilF/pilF2 41561..42103 (+) 543 WP_017805302.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  VY92_RS00205 (VY92_000205) dprA 42248..43348 (+) 1101 WP_035687998.1 DNA-processing protein DprA Machinery gene
  VY92_RS00210 (VY92_000210) rsmD 43345..43953 (-) 609 WP_046097259.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  VY92_RS00215 (VY92_000215) pilA 44109..45527 (+) 1419 WP_035687996.1 signal recognition particle-docking protein FtsY Machinery gene

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20715.73 Da        Isoelectric Point: 8.0752

>NTDB_id=404662 VY92_RS00200 WP_017805302.1 41561..42103(+) (pilF/pilF2) [Avibacterium paragallinarum strain AVPG2015]
MKIYQCILSILFSLFLVACVSTPLNKQDFDKQQAAKARVELGIGYLEQNELGLAKQNLDKALAYAPNYYLVHSALAYFYQ
LQGENTRAENAYLKALKLDDKQGDVFNNYAVFLCKQGQFEQAYLRFEQALATPNYYQQADTYENIVLCALAEKNAIRYEK
YKGLLEKLDPKRNQKTNVIH

Nucleotide


Download         Length: 543 bp        

>NTDB_id=404662 VY92_RS00200 WP_017805302.1 41561..42103(+) (pilF/pilF2) [Avibacterium paragallinarum strain AVPG2015]
ATGAAAATTTATCAATGTATCTTAAGCATTCTTTTTTCTCTCTTTCTCGTAGCCTGTGTTTCCACTCCCTTAAATAAGCA
AGACTTTGATAAGCAGCAAGCCGCAAAGGCGAGAGTGGAGCTTGGCATTGGCTATCTTGAGCAAAATGAACTTGGTCTGG
CGAAGCAAAATTTAGACAAAGCTTTAGCTTATGCCCCGAATTATTATTTAGTGCATTCAGCGTTGGCATATTTTTATCAG
CTTCAAGGGGAGAATACTCGTGCGGAAAATGCGTATTTGAAAGCCCTAAAACTCGACGATAAACAAGGCGATGTATTTAA
TAATTATGCCGTCTTTTTGTGCAAACAAGGACAATTCGAACAGGCTTATCTACGATTTGAACAAGCTCTCGCCACACCTA
ATTATTATCAGCAAGCGGATACTTACGAGAATATTGTACTTTGTGCGTTAGCAGAGAAAAATGCAATACGTTATGAAAAA
TATAAAGGCTTGCTGGAGAAACTAGATCCTAAAAGAAATCAAAAGACAAATGTTATTCATTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_17)

(91-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

50.292

95

0.478
  pilF Glaesserella parasuis strain SC1401

43.407

100

0.439