Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | B565_RS16950 | Genome accession | NC_015424 |
| Coordinates | 3772695..3773015 (+) | Length | 106 a.a. |
| NCBI ID | WP_005349207.1 | Uniprot ID | - |
| Organism | Aeromonas veronii B565 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3767695..3778015
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B565_RS16935 (B565_3346) | yfbV | 3768134..3768574 (-) | 441 | WP_005339116.1 | terminus macrodomain insulation protein YfbV | - |
| B565_RS16940 (B565_3347) | - | 3768879..3770081 (+) | 1203 | WP_005349210.1 | acetate kinase | - |
| B565_RS16945 (B565_3348) | pta | 3770137..3772317 (+) | 2181 | WP_005339119.1 | phosphate acetyltransferase | - |
| B565_RS16950 (B565_3349) | comE1/comEA | 3772695..3773015 (+) | 321 | WP_005349207.1 | ComEA family DNA-binding protein | Machinery gene |
| B565_RS16955 (B565_3350) | galU | 3773112..3774023 (+) | 912 | WP_005349205.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| B565_RS16960 (B565_3351) | - | 3774237..3775634 (+) | 1398 | WP_005349204.1 | peptide MFS transporter | - |
| B565_RS16965 (B565_3352) | - | 3775709..3776680 (-) | 972 | WP_005349202.1 | response regulator | - |
| B565_RS16970 (B565_3353) | - | 3776921..3777619 (+) | 699 | WP_005349201.1 | DnaT-like ssDNA-binding domain-containing protein | - |
Sequence
Protein
Download Length: 106 a.a. Molecular weight: 11241.23 Da Isoelectric Point: 9.6564
>NTDB_id=40460 B565_RS16950 WP_005349207.1 3772695..3773015(+) (comE1/comEA) [Aeromonas veronii B565]
MLMKKLSAVMLLACLPLFSQPVLAADKAAPKPTTTAEVAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK
MLMKKLSAVMLLACLPLFSQPVLAADKAAPKPTTTAEVAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK
Nucleotide
Download Length: 321 bp
>NTDB_id=40460 B565_RS16950 WP_005349207.1 3772695..3773015(+) (comE1/comEA) [Aeromonas veronii B565]
ATGCTGATGAAGAAGCTTTCTGCAGTCATGCTGCTGGCCTGCTTGCCCCTGTTCAGCCAACCCGTGCTGGCCGCAGATAA
GGCAGCACCCAAGCCAACAACCACAGCCGAGGTCGCCAAGGAGTCCGGCAAGCTGAATATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGTGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A
ATGCTGATGAAGAAGCTTTCTGCAGTCATGCTGCTGGCCTGCTTGCCCCTGTTCAGCCAACCCGTGCTGGCCGCAGATAA
GGCAGCACCCAAGCCAACAACCACAGCCGAGGTCGCCAAGGAGTCCGGCAAGCTGAATATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGTGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
50 |
100 |
0.528 |
| comEA | Vibrio cholerae C6706 |
49.057 |
100 |
0.491 |
| comEA | Vibrio cholerae strain A1552 |
49.057 |
100 |
0.491 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
46.018 |
100 |
0.491 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
45.361 |
91.509 |
0.415 |
| comEA | Acinetobacter baylyi ADP1 |
48.235 |
80.189 |
0.387 |
| comEA | Legionella pneumophila str. Paris |
39.394 |
93.396 |
0.368 |
| comEA | Legionella pneumophila strain ERS1305867 |
39.394 |
93.396 |
0.368 |